Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aev05g1271 | ATGGCAGCTTCTCTGGGATTGTTCTCCGCAGTCACCTTTGTAGCCTCAGAAAAGCCGTCGGCGCTGACCATGAGGCCCGCGCAGGTGAAGGTGCCGACGACGGTGCGGACGGTGCGAGCGGTGACCTCAGCCACCGTGTCGGAGCCTCCTTCCAACACAAAGGTTAGGGGAATCATGAAGCCTCGCAAAATTACACCCGAGATGCAAGCTATTTGCGGCGTTTCCGAGATTTCTCGAACCCAAGCTCTCAAGCACATTTGGGCCCACATCAAGGAACACAATCTTCAGGATCCTGAAAACAAGAGGGTTATAATTTGTGATGAAAAGCTGAAGCAGATATTTGCTGGGAGAGACCAAGTAGGCATGCTTGAGATTGCGGGATTGATCAGCCCTCACTTCCTTAAATGA | 408 | 0.5221 | MAASLGLFSAVTFVASEKPSALTMRPAQVKVPTTVRTVRAVTSATVSEPPSNTKVRGIMKPRKITPEMQAICGVSEISRTQALKHIWAHIKEHNLQDPENKRVIICDEKLKQIFAGRDQVGMLEIAGLISPHFLK* | 136 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aev05g1271 | 135 | PANTHER | SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D | 8 | 134 | - | - | |
| Aev05g1271 | 135 | SMART | swib_2 | 58 | 135 | IPR019835 | - | |
| Aev05g1271 | 135 | CDD | SWIB-MDM2_like | 62 | 133 | - | - | |
| Aev05g1271 | 135 | ProSiteProfiles | SWIB/MDM2 domain profile. | 57 | 135 | IPR003121 | - | |
| Aev05g1271 | 135 | Pfam | SWIB/MDM2 domain | 60 | 133 | IPR003121 | - | |
| Aev05g1271 | 135 | Gene3D | SWIB/MDM2 domain | 52 | 135 | IPR036885 | - | |
| Aev05g1271 | 135 | SUPERFAMILY | SWIB/MDM2 domain | 53 | 135 | IPR036885 | - | |
| Aev05g1271 | 135 | PANTHER | EXPRESSED PROTEIN-RELATED | 8 | 134 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aev05g1271 | Aev-Chr5 | 8923335 | 8925272 | Dispersed |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | SWI/SNF-BAF60b | Aev05g1271 | SWIB | 9.7e-29 | No_clan |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aev05g1271 | - | - | lja:Lj1g3v0050930.1 | 166.777 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Aev05g1271 | 05 | 8923335 | 8925272 | Aev05g1271 | 05 | 8923335 | 8925272 | ECH |