Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g1262 ATGGGAATCCGATCGGTGTTCGACGGCGGCGACATGAGAAGGGAATTCGAGAGATGCGGCGTCGACCCCAAGTTCATTCCGATTGTGTGGAAGCACGTCATCCTCAACCTCAACAATGGCCACGCTTCTGAATGGCCCAATCACGTTCCTTCTCTTCCTTCACCTGCTTACTCTCTCCTTCGTTCCAATTTCAAAACCCCTCTCTCTTCCTCCCTCCACTCTGTTTTCCACTCTGCTGATAACCTCACCTCCAAGCTTCTCATCAAGCTCCATAATGGAGCTTTTGTGGAGGCTGTGATAATGAGGTATGATACTCGTTTGGGCAAATATGCTGGTAAACCCCGTCCCGGTGGTTTAAGAGCAACTTTGTGTATATCATCTCAGGTTGGTTGTAAAATGGGTTGCAAGTTCTGTGCTACTGGAAGTATGGGATTCAAAAATAACTTATCGTCCGGAGAAATCGTTGAACAACTGGTTCATGCCTCTAAGTTTTCACAAATCCGTAATATTGTCTTCATGGGAATGGGAGAGCCTCTGAACAACTATTCTGCTGTGGTAGAATCTGTCCGTGTCATGACTGGATCGCCATTTCAATTGTCATTGAAAAGGATTACTATCTCAACGGTCGGCATCATTCATGCTATCAAAAAGCTTCATAATGATCTGCCTGGTTTGAACTTGGCAGTCTCACTGCACGCACCAGCCCAAGACATCCGCTGCCAGATAATGCCTGCTGCTCGTGCATTCCCATTGGAAAAACTGATGGATTCACTGCAAGAATATCAAAGGAACAGTCTGCAGAAAATATTGATCGAGTACATAATGCTTGATGGGGTGAATGACGAAGAGCAGCACGCCCACCAATTGGGGAAACTGCTAGAGACATTTCAAGTGGTAGTGAACTTGATACCTTTCAACCCTATTGGTACTTTGAGTCAATTCAAACCTACCAGTGAGGAGAAAGTTTCAGTGTTCCAGAAGATTCTTCGGGGTACCTACAATATTCGAACAACAGTTCGGAAACAGATGGGTCAGGATATAAGTGGTGCATGTGGACAATTGGTGGTTAACTTACCAGACAAGTCTCTTGGAAATGCTGAACCACTAACTGATATAGAAGATCTTGTTATTTGA 1134 0.4489 MGIRSVFDGGDMRREFERCGVDPKFIPIVWKHVILNLNNGHASEWPNHVPSLPSPAYSLLRSNFKTPLSSSLHSVFHSADNLTSKLLIKLHNGAFVEAVIMRYDTRLGKYAGKPRPGGLRATLCISSQVGCKMGCKFCATGSMGFKNNLSSGEIVEQLVHASKFSQIRNIVFMGMGEPLNNYSAVVESVRVMTGSPFQLSLKRITISTVGIIHAIKKLHNDLPGLNLAVSLHAPAQDIRCQIMPAARAFPLEKLMDSLQEYQRNSLQKILIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGTLSQFKPTSEEKVSVFQKILRGTYNIRTTVRKQMGQDISGACGQLVVNLPDKSLGNAEPLTDIEDLVI* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g1262 377 Pfam Radical SAM superfamily 126 284 IPR007197 GO:0003824|GO:0051536
Aev05g1262 377 Gene3D Aldolase class I 68 361 IPR013785 -
Aev05g1262 377 Pfam 4Fe-4S single cluster domain 130 216 - -
Aev05g1262 377 CDD Radical_SAM 130 331 - -
Aev05g1262 377 SFLD methyltransferase (Class A) 59 358 - -
Aev05g1262 377 SUPERFAMILY Radical SAM enzymes 122 322 - -
Aev05g1262 377 PIRSF Cfr 23 369 IPR004383 GO:0006364|GO:0008173
Aev05g1262 377 SFLD adenosine C2 methyltransferase (RlmN-like) 59 358 IPR004383 GO:0006364|GO:0008173
Aev05g1262 377 PANTHER 23S RRNA METHYLTRANSFERASE 3 367 IPR040072 -
Aev05g1262 377 PANTHER RADICAL SAM SUPERFAMILY PROTEIN 3 367 - -
Aev05g1262 377 ProSiteProfiles Radical SAM core domain profile. 117 346 IPR007197 GO:0003824|GO:0051536
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g1262 Aev-Chr5 8878211 8881102 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g1262 - - ccaj:109814608 654.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev05g1262 05 8878211 8881102 Aev05g1262 05 8878211 8881102 ECH