Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g0940 ATGCAGCCCAATCGCCAAAATGGCAGATATGTTTCACCGCTGCAGGACAAGATCGCAGCTTTGGAGATAAAAGCACCTGGGCAGATCAACTGTTCTGAGTTGGGACTTCCAAATCTGTCTAATGAGTGCAGCACTTGTGGAACCAAAGTTAGAAATTTTTGTGAAGGTCATTATGGAGTTATTAGATTTCCCATGTCCATTCCCCATCCATATTTTCTATCAGAGATTGCACAACTCTTGAACAAAATCTGCCCTGCATGTAAATCTATTCGACAGGCCAAGGGCGCTCAATTATTAATTGCAACCAAGCGGCTTTATGGTTGCAAATATTGTTCTGGAAATACTTATCCGACAATGAAATTCAAAGTTTCCTCCAATGATCTCTTCAGAAGAACTGCAATTATTGTAGAAATAAATGAAAGCTCTCCAAAGGCGAAGAAAGTTTTTGGGCGAAGATTACCGGCTGATTATTGGGATTTTATTCCTCCAGATACACAAGAAGAAGAAAGTTGTATAAAACCAAATAGAAGGGTTTTATCACCGAGTCAGGTTAATTATTTGTTGAATGATGTTGATCCAGACTTAGTTAAAAAATTTGTTCCTCAAATGGATTTGCTTGGTCTTAATTGTTTCCCGGTGACACCAAATTGCCATCGTCTGACAGAAGTTATGCATGCATTATCTAATTCGAACCGGTTGAGTTTTGATGACAGGACCAGGGCTACCAAGAAATTGATTGATTTCCGAGGTACTGCTAATGAGTTAATTTCTCGTGTTTTGGATTGCCTGAGGATCTCCAAGCTAAATCCTGATAAAACACCTGTTGATATGTTTACTGAAATCCGGCAAAAGAAAAATGCAGAAAATGCTTGCAATTCCTCAGGTTCGAGATGGATGAAAGATGTGGTTCTAGGAAAACGCAATGATAGTTCATTCCGTTCTGTTGTAGTTGGTGATCCAGATCTTGAGGTTGATGAAATTGGCATACCTTGTCAAATTGCAGAAAGTTTGCAGGTTTCTGAGTATGTGAACAAGCAGAATTGGGAAAAACTGCTTTATTGTTGTGAGTTACGCATGATAGAGAAGGGGCAGATAAAGGTCTGCAGAAAGGGTAGGCAAATTGTACTGTACAAAAAGGAAGACATTCAGATAGGAGACATGTTTTATAGGCCTCTTGGTGATGGCGATAAAGTGTTGATAAATAGGCCGCCTTCCATACATCAACATTCAATGATTGCCCTCTCAGTTAAAGTTCTTCCCATCTCTTCTGCAGTATCTATCAACCCACTCTGTTGTTCCCCACTGCGTGGGGATTTTGATGGTGATTGCCTTCATGGGTATATTCCACAATCAGTAGCTTCAAGAGTTGAGCTTAATGAGCTGGTTTCTTTAGATAAACAATTGATTAACGGGCAAAGTGGTAGAAATCTGCTTTCACTTTCTCAGGATAGTTTAACTGCTGCTCATTTGTTGATGGAAGATGGGGTCCTTTTAAATGGTTACCAAATTCAGCAGCTCCAGATGTTCTGCCCTGATAATTTAGCACTTCCTGCTATTGTTAAAGCTCCGTCCAGTAATACCTCATTTTGGACTGGCAAGCAACTGCTGGGCATGCTGTTTCCTTCTAATTTTGACTATTCTTTTCCTTCAAATGGTGTTTTGATCACTGATGGCGAGCTCGTATCTTCTTCTGAAGTTTCTGGTTGGTTACGTGATTCTGAATGTAATGTTTTCCAGAGTCTTGTGGAACAATTTGAAGGGAAAACTCTAGACTTTTTGTATGCTGCACAGAAAGTCCTTTGCGAGTGGTTGTCTATGACAGGTTTTACAGTGTCACTTGCAGACTTGTACCTTGCTTCTGAATCCGATGCACGGAAAAATATGATGGAGGACATCTTCTATGGCTTACATGAAGCAGAACAGGCATGTAACTACAAACAGTTGTTAGTAGATTGCTACTGTGATTTTCTGGCAGGAATTGTTGAAGGAAATGGAAATGCTCCAACTGATCTTGTTCGCCTGAACTACGAAAGGCAACTAAATGCTGCTCTAAGTCAAAGGTCAGTTGAGGCTTTTAGACAAGTTTTTCGCAATATTCAAAGTTTAGCTGACAGATATGGAAGTAAGGGCAACTCTTTCCTTGCTATGATTAAGGCTGGAAGCAAGGGTAATTTTCTGAAACTAGTCCAACATTCCATGTGTCTTGGTTTGCAACATTCTCTGGTTCGCTTGTCGTACAAATTTCCCCATCAACTCTCATGTGCTGCTTGGAATAATGAGAAGGGGCTTGATTCAGTACAGATGTGTTCTGGTACTTCTGAATCTGCTCAATCTTACATCCCATGCGCCGTGGTTGAAAGCTCTTTTCTGACGGGGTTGAACCCACTTGAATGTTTTGTTCATTCAGTGACAAATCGCGATAGCTCTTTTAGTGACAATGCAGACCTTCCTGGAACATTGACCCGTAGACTAATGTTTTTCATGCGTGATGTGTATGATGCATATGATGGAACTGCCAGAAATTTATATGGTAATCAAATTGTTCAGTTTTCTTATGATACTGGTGAGGATTCATCTGCTGATTGCTGTCTCCAAGAGGCTAGTATTGGTGGCGAACCAGTTGGAGCACTTTCTGCTTGTGCTATTTCTGAAGCTGCATACAGTGCTTTGGGTCAACCAATTAGTCTTCTTGAAACATCACCTTTGCTGAATTTGAAAAATGTTCTGGAGTGTGGTTCAAAGAAAAGAACTGGAGATCAGACCGTGTCTTTATTTTTGTCTGACAAATTCCGTAATCGAAGATACGGGTTTGAGTATGCAGCCTTTGATGTGAAGAATTATTTGGAAAGAATGATGTTCTCAGACATTGTTTCTACTGCCATGATAATATTCACTCCCCACTCCTACAGCAAGGAAAAGTACAGCCCTTGGGTTTGTCATTTTCATTTAGACAGGGATATTGTTCAGAGAAGACGCCTGAAAGTGGCTTCCATCATTCACTCTCTTAAAAAGAGATGTGATTTGCTCAGAAAAGAATCAAAAATCTGTTTTCCCAGTTTAAAAATAGCAAGCAAGAAGTGTTCTGCCACATACATGGCTAAGGGAGGTAAAGATGCTTCTACAAATAAAGAAATAACCGGTGATGATTGCATCACTGTTACAGTTGTTGAAAACTCACGTGAAGCCATACAACTTGACGCTGTTCGCGACTTGATGATACCTTTCCTTCTGGGAACGGCTATAAAAGGATTTCCGGAGATCAAGAAGGTCAATATTCTGTGGAATAATCTGCCCAAATCATCAAATTCTTATAATGGTTCTTCTGGTGAACTATATTTGAGGGTTACTATGTCCGGTGACAATAATGGTGGAAGATTTTGGGGTCTGCTCATAAATCATTGTCTCAGGATAATGCATATGATTGACTGGACAAGAAGTCTTCCAGAAAATATTAATCATTTCAGCTCTGTCTATGGAATCGATGCAGGGTGGCAATATTTTCACCAGAACTTGGCTTCTGCAACATCTGATACCGGCAAGGCAATCCTTCCCAAGCATTTGCATCTTGTTGCTGATAGTTTGTCAGCCAGTGGACAGTTTGTAGGGTTAAATGGAAAGGGCATGGCACGGCAAAGACAACATGCATCTATCTCAGCTCCCTTTGTTCAAGCGTGCTTTTCAAATCCAGGTGGTTCCTTTATAAAAGCTGCTAAGTCTGGAATCACGGATGATCTCCGGGGTATCCTGGATGCATTGGCATGGGGAAACTGTCCACCCTTGGGAACAGGTGGACAGTTTGAAATCATATACTCAGCGAAGGGACAAGAGCTTGCTAAACCTGTAGATGTTTATAACCTGCTAGAAGCCACTTTGGAGCAGCCGAATGAAAAGACTGATACCCGTGCTACTTACAAATATTCGTCTGACAAATGCAGTTCTGCTTTTAGGCAGCAAAACGGTGGGTTTGGTTTGAAACGATGTAAGCAGATGAAAAACACAATAAAAAATTTTGTGACTGCAAATGATATTCGGAAGCTGACTGCTGCATCAAGGAACATACTGAACAGGTATTCAATTGATGAGAAACTAAATGACAAGGACCTGTTTACCATGCTGAGAGTTCTGCATTTTCATCCCCATAGAGATGAGAAGTATGGCTCTGGACCGCAGTACATCAAGGTTGGGTTTCATCCTAAATACAAGGATGCACGCTGCTTCTTCATAGAACGAATTGATGGTAGTGTGGAAGATTTTTCATACCGGAAATGCATTCTTAGTGCTCTTGAGGTTGTTGACCCAGAAAAGGCAAAGATGCAGAAGAAGAAATGGCTGGGGCTTGATGGCAAATAG 4350 0.4078 MQPNRQNGRYVSPLQDKIAALEIKAPGQINCSELGLPNLSNECSTCGTKVRNFCEGHYGVIRFPMSIPHPYFLSEIAQLLNKICPACKSIRQAKGAQLLIATKRLYGCKYCSGNTYPTMKFKVSSNDLFRRTAIIVEINESSPKAKKVFGRRLPADYWDFIPPDTQEEESCIKPNRRVLSPSQVNYLLNDVDPDLVKKFVPQMDLLGLNCFPVTPNCHRLTEVMHALSNSNRLSFDDRTRATKKLIDFRGTANELISRVLDCLRISKLNPDKTPVDMFTEIRQKKNAENACNSSGSRWMKDVVLGKRNDSSFRSVVVGDPDLEVDEIGIPCQIAESLQVSEYVNKQNWEKLLYCCELRMIEKGQIKVCRKGRQIVLYKKEDIQIGDMFYRPLGDGDKVLINRPPSIHQHSMIALSVKVLPISSAVSINPLCCSPLRGDFDGDCLHGYIPQSVASRVELNELVSLDKQLINGQSGRNLLSLSQDSLTAAHLLMEDGVLLNGYQIQQLQMFCPDNLALPAIVKAPSSNTSFWTGKQLLGMLFPSNFDYSFPSNGVLITDGELVSSSEVSGWLRDSECNVFQSLVEQFEGKTLDFLYAAQKVLCEWLSMTGFTVSLADLYLASESDARKNMMEDIFYGLHEAEQACNYKQLLVDCYCDFLAGIVEGNGNAPTDLVRLNYERQLNAALSQRSVEAFRQVFRNIQSLADRYGSKGNSFLAMIKAGSKGNFLKLVQHSMCLGLQHSLVRLSYKFPHQLSCAAWNNEKGLDSVQMCSGTSESAQSYIPCAVVESSFLTGLNPLECFVHSVTNRDSSFSDNADLPGTLTRRLMFFMRDVYDAYDGTARNLYGNQIVQFSYDTGEDSSADCCLQEASIGGEPVGALSACAISEAAYSALGQPISLLETSPLLNLKNVLECGSKKRTGDQTVSLFLSDKFRNRRYGFEYAAFDVKNYLERMMFSDIVSTAMIIFTPHSYSKEKYSPWVCHFHLDRDIVQRRRLKVASIIHSLKKRCDLLRKESKICFPSLKIASKKCSATYMAKGGKDASTNKEITGDDCITVTVVENSREAIQLDAVRDLMIPFLLGTAIKGFPEIKKVNILWNNLPKSSNSYNGSSGELYLRVTMSGDNNGGRFWGLLINHCLRIMHMIDWTRSLPENINHFSSVYGIDAGWQYFHQNLASATSDTGKAILPKHLHLVADSLSASGQFVGLNGKGMARQRQHASISAPFVQACFSNPGGSFIKAAKSGITDDLRGILDALAWGNCPPLGTGGQFEIIYSAKGQELAKPVDVYNLLEATLEQPNEKTDTRATYKYSSDKCSSAFRQQNGGFGLKRCKQMKNTIKNFVTANDIRKLTAASRNILNRYSIDEKLNDKDLFTMLRVLHFHPHRDEKYGSGPQYIKVGFHPKYKDARCFFIERIDGSVEDFSYRKCILSALEVVDPEKAKMQKKKWLGLDGK* 1450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g0940 1449 CDD RNAP_IV_RPD1_N 16 840 IPR040403 -
Aev05g0940 1449 Pfam RNA polymerase Rpb1, domain 2 305 463 IPR000722 GO:0003677|GO:0003899|GO:0006351
Aev05g0940 1449 Gene3D RNA polymerase II, clamp domain 16 104 IPR044893 -
Aev05g0940 1449 Gene3D RNA polymerase Rpb1, domain 3 472 618 IPR042102 -
Aev05g0940 1449 Pfam Protein of unknown function (DUF3223) 1352 1424 - -
Aev05g0940 1449 Gene3D RNA polymerase ii 338 390 - -
Aev05g0940 1449 Gene3D - 301 471 - -
Aev05g0940 1449 Gene3D - 1332 1427 - -
Aev05g0940 1449 PANTHER DNA-DIRECTED RNA POLYMERASE 17 1349 IPR045867 GO:0003899|GO:0006351
Aev05g0940 1449 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 26 1268 - -
Aev05g0940 1449 Pfam RNA polymerase Rpb1, domain 4 679 745 IPR007083 GO:0003677|GO:0003899|GO:0006351
Aev05g0940 1449 SMART rpolaneu7 204 492 IPR006592 GO:0003677|GO:0003899|GO:0006351
Aev05g0940 1449 PANTHER DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 17 1349 - -
Aev05g0940 1449 Pfam RNA polymerase Rpb1, domain 3 468 616 IPR007066 GO:0003677|GO:0003899|GO:0006351
Aev05g0940 1449 Gene3D - 662 793 IPR038120 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g0940 Aev-Chr5 6613062 6625542 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g0940 K16250 - gmx:100796185 2090.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev05g0940 05 6613062 6625542 Aev05g0940 05 6613062 6625542 ECH