Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g0938 ATGGCCAACAACGTCGGGATTCTCGCTATTGATATCTACTTCCCCCCCACCTGCGTCCACCAGGAAGCATTGGAGGCTCATGATGGTGCCAGTAAAGGGAAATATACCATTGGGCTTGGACAAGATTGCATGGCGTTCTGTACTGAGGTAGAAGATGTCATCTCCATGAGTTTGACAGTAGTCACTTCCCTTCTTGACAAGTATGGGATTGATCCTAAACAAATTGGTCGCTTGGAAGTCGGCAGCGAGACTGTGATAGACAAAAGCAAATCCATCAAGACTTTTCTCATGCAGATCTTCGAGAAACATGGAAATACTGACATTGAAGGCGTTGATTCGACTAATGCTTGCTATGGAGGGACTGCTGCTTTGTTCAATTGTGTCAATTGGGTGGAGAGCTGTTCATGGGATGGACGCTATGGACTTGTTGTCTGCACTGACAGTGCTGTCTATGCTGAAGGACCTGCTCGGCCTACCGGAGGAGCAGCTGCTATTGCCATGTTAATTGGTCCTGATGCTCCCATTGCATTTGAAAGCAGATTGAGGGGAAGTCACATGTCACATGCTTATGATTTTTACAAGCCTAATCTTGCTAGCGAATATCCGGTTGTTGATGGGAAACTTTCTCAAACATGTTACCTTATGGCTCTTGATTCTTGCTATAAACAACTCAGCCACAAATATGAGAAACTCAATGGAAAACCATTTTCTCTTTCTGATGCTGAGTACTTTGTATTTCACTCTCCTTATAATAAGCTTGTACAGAAAAGTTTTGCTCGATTGTTGTTCGATGATTTCATGAGGAATCCCAGTTCTGTTGATGAAGCTGTCAAAGAAAAGCTTGAACCTTTCGCCACACTATCCGGTGATGAGAGCTACCAAAGCAGGGATCTTGAAAAGGCTTCACAGCAAGTTGCAAAGCCTCTATATGATGCTAAGGTTCAACCAACCACTTTGATACCAAAGCAAGTTGGGAACATGTACACTGCATCACTTTATGCAGCATTTGCATCCCTTATTCACAACAGACATAGCACATTGGCAGGCAAGAGGGTGATATTGTTTTCGTATGGAAGTGGCTTAACTGCCACAATGTTTTCATTGCAATTACGCGACGGCCAGCATCCGTTTAGCTTGTCCAACATTGCAGAAGTAATGGATGTTGCTGGAAAATTGAAGTCAAGGCATGAGATTGATCCAGAAAGGTTTGTTGAAACCCTGAAGCTAATGGAACATAGATATGGTGCGAAGGATTTTGTGACAAGCAAAGATAGTAGCCTCTTATCTCCAGGCACATTCTATCTGACTGAAGTAGATTCCATGTATCGTAGATTCTATGCGAAGAAAACTTGTGAGAATGGTTTCGCTGCCAAAAGTAACGGCGTGATTACGAATGGTCATTGA 1404 0.433 MANNVGILAIDIYFPPTCVHQEALEAHDGASKGKYTIGLGQDCMAFCTEVEDVISMSLTVVTSLLDKYGIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKHGNTDIEGVDSTNACYGGTAALFNCVNWVESCSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPDAPIAFESRLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKQLSHKYEKLNGKPFSLSDAEYFVFHSPYNKLVQKSFARLLFDDFMRNPSSVDEAVKEKLEPFATLSGDESYQSRDLEKASQQVAKPLYDAKVQPTTLIPKQVGNMYTASLYAAFASLIHNRHSTLAGKRVILFSYGSGLTATMFSLQLRDGQHPFSLSNIAEVMDVAGKLKSRHEIDPERFVETLKLMEHRYGAKDFVTSKDSSLLSPGTFYLTEVDSMYRRFYAKKTCENGFAAKSNGVITNGH* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g0938 467 SUPERFAMILY Thiolase-like 175 447 IPR016039 GO:0016746
Aev05g0938 467 Pfam Hydroxymethylglutaryl-coenzyme A synthase C terminal 175 449 IPR013746 GO:0004421|GO:0006084|GO:0010142
Aev05g0938 467 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 1 449 - -
Aev05g0938 467 CDD init_cond_enzymes 4 368 - -
Aev05g0938 467 SUPERFAMILY Thiolase-like 4 172 IPR016039 GO:0016746
Aev05g0938 467 Gene3D - 1 451 IPR016039 GO:0016746
Aev05g0938 467 TIGRFAM HMG-CoA-S_euk: hydroxymethylglutaryl-CoA synthase 2 449 IPR010122 GO:0004421|GO:0008299
Aev05g0938 467 Pfam Hydroxymethylglutaryl-coenzyme A synthase N terminal 3 174 IPR013528 -
Aev05g0938 467 ProSitePatterns Hydroxymethylglutaryl-coenzyme A synthase active site. 105 120 IPR000590 GO:0004421|GO:0008299
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g0938 Aev-Chr5 6601693 6605122 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g0938 K01641 - gmx:100780554 840.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev05g0938 05 6601693 6605122 Aev05g0938 05 6601693 6605122 ECH
Aev01g1871 01 23664830 23669491 Aev05g0938 05 6601693 6605122 PCT