Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g0880 CTAGTAGTTTCAAATTCGAGTTCAAGGAGCAGTATTTTCTGCTTGAAAATGATGAATTGGAAAGGGAAGGAACCAGAGAAGGATGTGGAAGTGGTTATAGGAAGAGGTGACCGAGAAGCAGAGTCGTCTTCTTTTCAGAGAATGTGGGTTAATTCTGCTGATGGTAAGAAAAAATCGATTCATCCCCCAATTGAAACGATTTTTCATCTGCCTTCGCCGGAGAGGAAAAAGGGTTCTTCTTCCTTCAAGTCACTATTGGCTTCCCCTTTCACCAAACTTAGAAAAAGTAAGAGCATGCAAATGGTTCTAGAAGGTTCTCACGACCCTAAAGATGCAGAAATTGTGGAGTCCTTCCGCAGAATGCTGTTTCTTGAGGGTGTCTTGCCTCCCAAGCACAATGATTATCATACTCTTTTGAGGTTCTTACGCATGAGAGATTTTGACCTGTCAAATTCCAAGGAGGTGTTTCTGAATTATCTGAAATGGCGCGAGGAATTTCGAGTAGACTTGCTTCCTAAGGAATTCAAATTCCCGGAGTACACAGAAGTAAAGAAATGCTATCCTCATGGATACCATGGAGTAGACAGATATGGAAGGCCTGTGTATATTGAGAGATTAGGGATGATAGACCTTAATAGACTGATGCAAGTAACCACATTTGAAAGGTTTGTCAAGTATCATGTGATAGAACAAGAGAAAACGATGAGAATAAGATACCCTGCATGTTCAATAGCAGCTAAAAGTCACATAGCATCCACTACAAGTATCTTGGATGTCAATGGAGTAGGAGTGTCTAATTTCTCAAAGCCAGCAAGGTACCTCTTTATGGAGATTCAAAGGATCGATAGTAATTACTATCCTGAGACTCTTCATAAGCTCTTTATTATCAATGCTGGATCTGGATTTAGGATGCTGTGGAAAGCCGTGAGGACATTCCTAGATGTACGCACAGTAGCAAAAATTCAAGTGTTGGGCACAAATTATCTTAGTGCTCTTTTTGAGGCTATTGAACCAAGTAACTTGCCAACTTTTCTTGGTGGTAATTGCACATGTGCTGATTTCGGAGGTTGCTTGATGAGTGATAGAGGGCCATGGCAAAATCCAGAGCTGTTAGAAATGATTGAGGCCATTTCATTGAGAGAAGAGATGGAGAGAAATTGTGGAAATGGTGATGATGTGGCTCCTGAAGATTCCTTGATGCACAAAAAGGCATGGCACTTGAGGAGACAACATGTGCTGGAACAGAATCTATATAAGTTAGCACTACAAAAAATTAATGGGCTAGAAGCTGCTCTTGAAGGCACCAAAAATAAAATTGAGACATTGGAAGGGGCACTTCAGGACACCAAGATGGCATTGAAAGAACTGGCACAGCATATTGAACAGTCAAGAATGTGA 1398 0.4099 LVVSNSSSRSSIFCLKMMNWKGKEPEKDVEVVIGRGDREAESSSFQRMWVNSADGKKKSIHPPIETIFHLPSPERKKGSSSFKSLLASPFTKLRKSKSMQMVLEGSHDPKDAEIVESFRRMLFLEGVLPPKHNDYHTLLRFLRMRDFDLSNSKEVFLNYLKWREEFRVDLLPKEFKFPEYTEVKKCYPHGYHGVDRYGRPVYIERLGMIDLNRLMQVTTFERFVKYHVIEQEKTMRIRYPACSIAAKSHIASTTSILDVNGVGVSNFSKPARYLFMEIQRIDSNYYPETLHKLFIINAGSGFRMLWKAVRTFLDVRTVAKIQVLGTNYLSALFEAIEPSNLPTFLGGNCTCADFGGCLMSDRGPWQNPELLEMIEAISLREEMERNCGNGDDVAPEDSLMHKKAWHLRRQHVLEQNLYKLALQKINGLEAALEGTKNKIETLEGALQDTKMALKELAQHIEQSRM* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g0880 465 Gene3D - 168 378 IPR036865 -
Aev05g0880 465 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH11 53 463 - -
Aev05g0880 465 PRINTS Cellular retinaldehyde-binding protein signature 137 159 - -
Aev05g0880 465 PRINTS Cellular retinaldehyde-binding protein signature 306 325 - -
Aev05g0880 465 PRINTS Cellular retinaldehyde-binding protein signature 339 348 - -
Aev05g0880 465 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 179 353 IPR001251 -
Aev05g0880 465 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 53 463 - -
Aev05g0880 465 Pfam CRAL/TRIO domain 187 347 IPR001251 -
Aev05g0880 465 SUPERFAMILY CRAL/TRIO N-terminal domain 104 173 IPR036273 -
Aev05g0880 465 Gene3D - 86 166 - -
Aev05g0880 465 SUPERFAMILY CRAL/TRIO domain 178 373 IPR036865 -
Aev05g0880 465 SMART sec14_4 179 350 IPR001251 -
Aev05g0880 465 CDD SEC14 180 348 IPR001251 -
Aev05g0880 465 Coils Coil 418 459 - -
Aev05g0880 465 SMART CRAL_TRIO_N_2 134 159 IPR011074 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g0880 Aev-Chr5 6166106 6168808 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g0880 132 344 Acyl Lipid Metabolism Gene Families AT1G55840 27.189 5.13e-17 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g0880 - - aip:107643040 652.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev05g0880 05 6166106 6168808 Aev05g0880 05 6166106 6168808 ECH