Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g0804 ATGCGCGCCTTGGATCTCAGACGCTTGTTCCCTCTTTCAAATGTGTATTGTTCCAATCTGCAACACTACTGCACCAATCACTCTCTGTCTCAGCCCTTCAAACCTCCTTTTCCCATTCCCAGAATCAATGGCCCAACGCCCGATTTCGACGAGTCTCTGCTCCTCCGCTACCTCTCCAATGGCGGGCACCACCAAGCACGAAACCTGCTTCACCAATTCTTCCGAGGCCACGACCTCCATGCCAGCATTGTTCGCTCGACTTCCTTACTCACCAAGTACTCACGTGACGGTTACATCCACGAAGCTCGAATGCTGTTCGATATAATGCCTCACAGAAACATAGTCACTTACAATGCCATGTTGTCGGGTTACCTGCAATCTGGGATGCTCGACGAGGCTTCCCGGTTCTTCGAAGAGATGCCGGATAGGAACGTTGTTTCCTGGACTGCCATGCTCAGCGGCTTGGCCGGTGCTGGGAGGATTGATGATGCGAGGAAGGTGTTTGATGAAATGCCGGAGAAGAATGTGGTTTCGTGGAATTCGATGGTGGCAGGGTTGATTGTGAACGGGGAGTTGGAGGAAGCCAGGATGGTTTTTGAGCAGACGCCGGAGAAAAATGTGGCATCTTGGAATGGTATGATTGCGGGTTGTGTTGAAAATGGTAGAATGGAGGAAGCAAGAGCCTTGTTTGACAAGATGGAGTGTAGGAATGTGGTTACTTGGACTAGTATGATATCTGGTTATTGTAGGGTGGGCAATGTCGATGAGGCTTATGGTTTGTTCGGGACTATGCCGGAGAAAAATGTGGTTTCTTGGACGGCCATGATAGGTGGGTTCGCCTGGAATGGCTTGTACGAAGAGGCATTGTTGCTTTTTCTTGAGATGAGGCTTTCTAATGCAAAACCAAATGGGGAGACCTTTATTTCTCTTGCCTATGCCTGTGGAGGTTTGGGTTTTCCTTCCATTGGAAAGCAGTTACATGCTTATCTAATTGTTAATGGCTGGAAACTTGATGATTATGATAGAAGGTTATACAGAAGTCTCGTTCGGATGTACTCCAAGTTTGGTCTTATGGACTCCGCACACAATCTTTTTGAAGGCAATCTGAATAGCTGTGATGATCAGTCTTTCAACTCTATGATAAATGGTTATATTCAGACCGATCAGTTAGAAAAGGCTGAAGATTTGTTTGAAAGAGTACCCATTAGAAACATAATTGCATGTACTTGCATGATCTCTGGTTATCTTAGTTCTGGGCAAGTATTAAAGGCACGCGATCTCTTTAATAACATGCCAGAGAAGGATTCAATGACATGGACTTCAATGATTTATGGGTATGTTCAAAATGAGCTAATTGCTGAAGCCATCAACTTATTTGCTGAAATGATGGCTGATGGTGTTACGCCTATAACTTCTACATTTGCTGTTCTTTTCGGTGCCATTGGTTCAGTTGCATATCTTGAACAGGGGCGTCAATTACATGGTATGCAGTTAAAGACAATATATGAATCTGATTTGATTCTTGAAAACTCTCTAATTTCGATGTATGCAAAATGTGGAGGGATAGATGATGCATATAGGGTATTCTCTAGCATGAATTTCCGGGACAAGATTTCATGGAACTCCATGATCATGGGCCTTGCTGATCATGGGAGAGCAAGTGAAGCTTTGAAGGTGTATGAAACTATGCTTGAAATGGGGATATGCCCAGATTCTATGACTTTCCTCAGTGTGTTGACAGCATGTGCTCATGCTGGTCTTGTTGATAAAGGATGGGAGTTATTTAATGCCATGGTTAATGCTTATGGACTTCAACCTGGCCTGGAGCATTACATTAGTATGGTCAATCTTCTAGGGCGAGCGGGAAAGGTGAAGGATGCAGAGGAGTTTGTCTCAAGGCTACCAATAGAACCAAATCATGCCATTTGGGGAGCATTACTTGGGGTCTGTGGTTTTAGCAAAACAGATGCAGATGTTGCTACGCGTGCTGCGAAACGGCTACTGGAGCTGGATCCTCTAAATGCACCAGGCCATGTGGCCCTTTGTAACATATATGCTGCAAATCATAGCCACATTGAGGAAACGAGTTTGAGAAAAGAAATGAGGTTGAAAGGTGTGAGGAAGGAGCCTGGATGTAGTTGGGTATTAGTGAAGGGTAGAGTTCATGTTTTCCCATCAGGAGATAGATTAGAATCCCAAGTATATGATATATATGCTGCTACAAATTTGAGGATTTTTGTAAGTAATTCTTAA 2253 0.4425 MRALDLRRLFPLSNVYCSNLQHYCTNHSLSQPFKPPFPIPRINGPTPDFDESLLLRYLSNGGHHQARNLLHQFFRGHDLHASIVRSTSLLTKYSRDGYIHEARMLFDIMPHRNIVTYNAMLSGYLQSGMLDEASRFFEEMPDRNVVSWTAMLSGLAGAGRIDDARKVFDEMPEKNVVSWNSMVAGLIVNGELEEARMVFEQTPEKNVASWNGMIAGCVENGRMEEARALFDKMECRNVVTWTSMISGYCRVGNVDEAYGLFGTMPEKNVVSWTAMIGGFAWNGLYEEALLLFLEMRLSNAKPNGETFISLAYACGGLGFPSIGKQLHAYLIVNGWKLDDYDRRLYRSLVRMYSKFGLMDSAHNLFEGNLNSCDDQSFNSMINGYIQTDQLEKAEDLFERVPIRNIIACTCMISGYLSSGQVLKARDLFNNMPEKDSMTWTSMIYGYVQNELIAEAINLFAEMMADGVTPITSTFAVLFGAIGSVAYLEQGRQLHGMQLKTIYESDLILENSLISMYAKCGGIDDAYRVFSSMNFRDKISWNSMIMGLADHGRASEALKVYETMLEMGICPDSMTFLSVLTACAHAGLVDKGWELFNAMVNAYGLQPGLEHYISMVNLLGRAGKVKDAEEFVSRLPIEPNHAIWGALLGVCGFSKTDADVATRAAKRLLELDPLNAPGHVALCNIYAANHSHIEETSLRKEMRLKGVRKEPGCSWVLVKGRVHVFPSGDRLESQVYDIYAATNLRIFVSNS* 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g0804 750 SUPERFAMILY TPR-like 190 687 IPR011990 GO:0005515
Aev05g0804 750 SUPERFAMILY TPR-like 91 236 IPR011990 GO:0005515
Aev05g0804 750 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 270 730 - -
Aev05g0804 750 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 116 206 - -
Aev05g0804 750 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 203 270 - -
Aev05g0804 750 Gene3D Tetratricopeptide repeat domain 510 726 IPR011990 GO:0005515
Aev05g0804 750 Pfam PPR repeat 376 400 IPR002885 -
Aev05g0804 750 Pfam PPR repeat 611 633 IPR002885 -
Aev05g0804 750 Pfam PPR repeat 510 532 IPR002885 -
Aev05g0804 750 Pfam PPR repeat 146 176 IPR002885 -
Aev05g0804 750 Pfam PPR repeat 177 206 IPR002885 -
Aev05g0804 750 Pfam PPR repeat 345 366 IPR002885 -
Aev05g0804 750 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 407 IPR002885 -
Aev05g0804 750 Gene3D Tetratricopeptide repeat domain 201 267 IPR011990 GO:0005515
Aev05g0804 750 Gene3D Tetratricopeptide repeat domain 338 403 IPR011990 GO:0005515
Aev05g0804 750 Gene3D Tetratricopeptide repeat domain 51 176 IPR011990 GO:0005515
Aev05g0804 750 Gene3D Tetratricopeptide repeat domain 404 492 IPR011990 GO:0005515
Aev05g0804 750 Gene3D Tetratricopeptide repeat domain 268 337 IPR011990 GO:0005515
Aev05g0804 750 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 237 271 IPR002885 -
Aev05g0804 750 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 536 570 IPR002885 -
Aev05g0804 750 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 113 147 IPR002885 -
Aev05g0804 750 TIGRFAM PPR: pentatricopeptide repeat domain 376 399 IPR002885 -
Aev05g0804 750 TIGRFAM PPR: pentatricopeptide repeat domain 146 177 IPR002885 -
Aev05g0804 750 TIGRFAM PPR: pentatricopeptide repeat domain 177 201 IPR002885 -
Aev05g0804 750 TIGRFAM PPR: pentatricopeptide repeat domain 574 606 IPR002885 -
Aev05g0804 750 TIGRFAM PPR: pentatricopeptide repeat domain 407 434 IPR002885 -
Aev05g0804 750 TIGRFAM PPR: pentatricopeptide repeat domain 538 572 IPR002885 -
Aev05g0804 750 TIGRFAM PPR: pentatricopeptide repeat domain 270 303 IPR002885 -
Aev05g0804 750 TIGRFAM PPR: pentatricopeptide repeat domain 239 269 IPR002885 -
Aev05g0804 750 TIGRFAM PPR: pentatricopeptide repeat domain 438 469 IPR002885 -
Aev05g0804 750 TIGRFAM PPR: pentatricopeptide repeat domain 209 238 IPR002885 -
Aev05g0804 750 TIGRFAM PPR: pentatricopeptide repeat domain 115 145 IPR002885 -
Aev05g0804 750 Pfam PPR repeat family 434 480 IPR002885 -
Aev05g0804 750 Pfam PPR repeat family 536 583 IPR002885 -
Aev05g0804 750 Pfam PPR repeat family 112 145 IPR002885 -
Aev05g0804 750 Pfam PPR repeat family 267 311 IPR002885 -
Aev05g0804 750 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 206 236 IPR002885 -
Aev05g0804 750 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 175 205 IPR002885 -
Aev05g0804 750 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 270 730 - -
Aev05g0804 750 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 435 469 IPR002885 -
Aev05g0804 750 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 571 606 IPR002885 -
Aev05g0804 750 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 116 206 - -
Aev05g0804 750 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 203 270 - -
Aev05g0804 750 Pfam E motif 656 715 IPR046848 -
Aev05g0804 750 Pfam PPR repeat 236 264 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g0804 Aev-Chr5 5613613 5615865 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g0804 29 738 Glycoside Hydrolase AT3G49170 30.469 3.01e-95 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g0804 - - gmx:102669560 1083.17