Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g0279 ATGCCACAAAGGGATATTTATGCAAGAAATATGCAATTTGGGCAAGTTGTTGATTACATGAAATTGTCCCTCAAAATCCCCAGAATTGTGAGTGCCACTGTTGCACATTGTGCAGCCTTAAAGATAGGTGCTCTAGCTCACATCCCCACTTCAACAACTCTACTCACTGTTTATTCAAAAGCTGGTGACTTCAACTCTTCAAGGGACTTGTTTGATGAGATGTACAACAGAGATGTGATTGCTTGGAATGCTATGGTCGCAGCTGCTCTTGATAATAACTGCTACATCACAGCAATGGACTTCTTAGAGAAAATGATCAAGGCCCAAACTGGGTTTGATTCCACCACTCTATTGCTTATGGTATCAGCTTCAGTACTCATGAAAAATTTTGAACAGGGACGGGTAATTCATTGTTGGAGTATAAAATCTGGGATGCTTGTGGATATCAGTTTAGGTAATGCTCTTACTGACATGTATGCAAAGTGTGGTGATATAAGCTCTTCTGAGAGTCTATTTAAAGAGATGGAATATAAAGACGTTGTTTCGTGGAATTCGATAATGAGAGGAAGTCTTTACGATGGCGATCCAGAGAAATCGTTGTATTACTTCAAAAGGATGATTTGTTCTGGAGAAACAGCCGACAAAATCAGTCTATCTTGTGCTATTTCAGCTTCTTCAAGTTTGGGAGAATTAGCTTTCGGCCAGTCCATTCATGGGCAGGGAATCAAACTAGGTTATAAGGATGGTTCCGTTGTTTCGGTTTCAAACTCTCTCATCTCATTGTATTCACAATGTGGAGACATTGATGATGCTGAGATGGTATTCAGAGAAATAGCATACAGAGATGTAGTTTCCTGGAATGCAATGATGGAAGGATATGCTTCAAATGAGAAGGTTGATGAAGCATTTGATCTTCTGCTTGAAATGCAAACAACAGGATCTTTCCAACCTGATGTAGTAACAATAACTACCATACTTCCGCTATGTGGAGAGCTTATGCTCACCAGAGAAGGAAGAACTATCCATGCATTCGCAATTCGAAGACATATGGTATCTAATCATCTTCCTTTGATGAACAGTCTTATAAACATGTACTCAAGCTGCAACTGTGTGGAGAAAGCCATAGTCTTGTTCAATTCTGCCTCAGAAAGAGATTTGATTTCATGGAATTCAATGATATCTGGATATTCCCAAAACAAGTTTTCTGAAGAAGCTCGAAATTTGTTCAGAGAGTTGCTACGATCGGGTCCGAATTGCAGCTCATCAACTGCTTTTGCTATTCTTTCTTCCTGCAATTCCCTTGAAAATCTCCACTTTGGAAAATCGGTTCACTGCTGGCAGTTAAAATCTGGATTTTTGAACCACATTCTTTTAGTAAATTCTCTCATGCACATGTATATCAATTGTGGAGACCTGGTTGAATGTTTCTCAATTTTGCATGAGAATTCTGCGCTTGCAGATATCGCTACATGGAACACTGTAATTGTGGGCTGTGTAAGAGGTGACCATTTTCAAGAGGCTCTTAAAACTCTCTGTTTGATGAGACAAGTATCTTCTATCAACTATGACTCCATAACCCTTGTAAATGTCTTGTCAGCCTGTGCATCCCTAGAACTGCTCAGCCAAGGAAAATCTGTCCACGGCCTTACCGTTAAATCTCCTACCGGATCAGACACTCGTGTCCAGAACGCGTTAATTACAATGTATGACAGATGCAAGGACATCAATAGTGCCAGACTAGTATTCAAGTTCTGCTCTACTCCCAACCTATGCTCATGGAACTGCATGATCTCAGCTTTATCTCATAATAAAGAAAGCAAACAAGCATTAGAACTATTTCGCCGTCTTCAGTTCAAACCAAATGAGTTCACCATTGTCAGTGTTCTCTCAGCCTGCACTCAAATGGGTGTCCTAAGACATGGAAAACAAGTTCATGCACACATGTTCAGGTCCGGTATCCAAGATAACTCTTTCCTATCAGCAGCTCTTATAGACTTGTACAGCAGTTGTGGAAGACTTGACACTGCTCTCAAAGTATTCAAACATTCAGAGGAGAGGTCAGAATCAGCTTGGAACTCAATGATTGCTGCATATGGATATCATGGGAATGGACACAAAGCAATCAAACTCTTCCATGAGATGTGCAATTCAGGAACCAAGGTGACAAAAAGCACTTTTGTTAGCCTATTATCAGCATGCAGCCATTCAGGCCTAGTGAAGCAAGGTCTTTGTTACTACAAGAGCATGTTGGATGAATATGGAGTACAACCTGAGACTGAGCATCAAGTTTATGTGGTTGACATGTTAGGCAGATCAGGTAGGCTTGATGAGGCATATGAGTTTGTTAAGGGGTTACAGTCCAAGGCAAGCTCAGGGGTGTGGGGAACACTCCTAAGTGCATGCAACTATCATGGAGAGATCAAGTTAGGGAAACAAGTTGCTAAACATCTGTTTGAGGTGGAGCCTCAAAATGTTGGATATTACATATCACTGTTTAATATGTATGTTGCTGCAGGAAGGTGGAAAGATGCTACTGAATTGAGACAGTATATAGAGGACCAAGGATTAAGAAAAGCTGCAGGTTATAGCCTTATTGATGTTGGTTTGGTATAG 2613 0.406 MPQRDIYARNMQFGQVVDYMKLSLKIPRIVSATVAHCAALKIGALAHIPTSTTLLTVYSKAGDFNSSRDLFDEMYNRDVIAWNAMVAAALDNNCYITAMDFLEKMIKAQTGFDSTTLLLMVSASVLMKNFEQGRVIHCWSIKSGMLVDISLGNALTDMYAKCGDISSSESLFKEMEYKDVVSWNSIMRGSLYDGDPEKSLYYFKRMICSGETADKISLSCAISASSSLGELAFGQSIHGQGIKLGYKDGSVVSVSNSLISLYSQCGDIDDAEMVFREIAYRDVVSWNAMMEGYASNEKVDEAFDLLLEMQTTGSFQPDVVTITTILPLCGELMLTREGRTIHAFAIRRHMVSNHLPLMNSLINMYSSCNCVEKAIVLFNSASERDLISWNSMISGYSQNKFSEEARNLFRELLRSGPNCSSSTAFAILSSCNSLENLHFGKSVHCWQLKSGFLNHILLVNSLMHMYINCGDLVECFSILHENSALADIATWNTVIVGCVRGDHFQEALKTLCLMRQVSSINYDSITLVNVLSACASLELLSQGKSVHGLTVKSPTGSDTRVQNALITMYDRCKDINSARLVFKFCSTPNLCSWNCMISALSHNKESKQALELFRRLQFKPNEFTIVSVLSACTQMGVLRHGKQVHAHMFRSGIQDNSFLSAALIDLYSSCGRLDTALKVFKHSEERSESAWNSMIAAYGYHGNGHKAIKLFHEMCNSGTKVTKSTFVSLLSACSHSGLVKQGLCYYKSMLDEYGVQPETEHQVYVVDMLGRSGRLDEAYEFVKGLQSKASSGVWGTLLSACNYHGEIKLGKQVAKHLFEVEPQNVGYYISLFNMYVAAGRWKDATELRQYIEDQGLRKAAGYSLIDVGLV* 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g0279 870 TIGRFAM PPR: pentatricopeptide repeat domain 592 617 IPR002885 -
Aev05g0279 870 TIGRFAM PPR: pentatricopeptide repeat domain 284 318 IPR002885 -
Aev05g0279 870 TIGRFAM PPR: pentatricopeptide repeat domain 52 79 IPR002885 -
Aev05g0279 870 TIGRFAM PPR: pentatricopeptide repeat domain 181 212 IPR002885 -
Aev05g0279 870 TIGRFAM PPR: pentatricopeptide repeat domain 387 416 IPR002885 -
Aev05g0279 870 TIGRFAM PPR: pentatricopeptide repeat domain 690 721 IPR002885 -
Aev05g0279 870 TIGRFAM PPR: pentatricopeptide repeat domain 490 516 IPR002885 -
Aev05g0279 870 Gene3D Tetratricopeptide repeat domain 637 749 IPR011990 GO:0005515
Aev05g0279 870 Gene3D Tetratricopeptide repeat domain 545 636 IPR011990 GO:0005515
Aev05g0279 870 Gene3D Tetratricopeptide repeat domain 750 864 IPR011990 GO:0005515
Aev05g0279 870 Pfam PPR repeat family 281 326 IPR002885 -
Aev05g0279 870 Pfam PPR repeat family 689 734 IPR002885 -
Aev05g0279 870 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 179 213 IPR002885 -
Aev05g0279 870 Pfam E motif 804 865 IPR046848 -
Aev05g0279 870 Pfam PPR repeat 387 416 IPR002885 -
Aev05g0279 870 Pfam PPR repeat 592 617 IPR002885 -
Aev05g0279 870 Pfam PPR repeat 460 481 IPR002885 -
Aev05g0279 870 Pfam PPR repeat 256 278 IPR002885 -
Aev05g0279 870 Pfam PPR repeat 51 77 IPR002885 -
Aev05g0279 870 Pfam PPR repeat 490 516 IPR002885 -
Aev05g0279 870 Pfam PPR repeat 662 682 IPR002885 -
Aev05g0279 870 Pfam PPR repeat 81 107 IPR002885 -
Aev05g0279 870 Pfam PPR repeat 153 179 IPR002885 -
Aev05g0279 870 Pfam PPR repeat 359 380 IPR002885 -
Aev05g0279 870 Pfam PPR repeat 181 210 IPR002885 -
Aev05g0279 870 Gene3D Tetratricopeptide repeat domain 38 128 IPR011990 GO:0005515
Aev05g0279 870 Gene3D Tetratricopeptide repeat domain 249 332 IPR011990 GO:0005515
Aev05g0279 870 Gene3D Tetratricopeptide repeat domain 129 237 IPR011990 GO:0005515
Aev05g0279 870 Gene3D Tetratricopeptide repeat domain 333 442 IPR011990 GO:0005515
Aev05g0279 870 Gene3D Tetratricopeptide repeat domain 443 544 IPR011990 GO:0005515
Aev05g0279 870 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 282 316 IPR002885 -
Aev05g0279 870 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 687 721 IPR002885 -
Aev05g0279 870 PANTHER - 561 867 - -
Aev05g0279 870 PANTHER - 32 230 - -
Aev05g0279 870 PANTHER - 421 617 - -
Aev05g0279 870 PANTHER - 214 433 - -
Aev05g0279 870 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 385 419 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g0279 Aev-Chr5 2069438 2072050 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g0279 214 868 Glycoside Hydrolase AT3G49170 31.241 3.79e-107 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g0279 - - ahf:112800190 1385.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev05g0279 05 2069438 2072050 Aev05g0279 05 2069438 2072050 ECH