Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g0013 ATGAGTGGGTTGAGTTTGAAGGGCCTCACATACATGCTTGCCATTGCATTTCTCATTTGGTCTGCCAATTTCGAAACCTGCATTGCAAGAAGGGGCAGGCATTGGAGGCACAGTAGCACTGTCTCAGCTTCTCTGTTCAAGAAGAAAGGAAAAACTTATAGCAATAGTCACAATCACCATGGTGGAGGATCAAAACAAAAGCCTCCAACACATAAAAGTACTCCACCACCACTGCCAAAGGCTCCATCATCTCCACCAAAAGTAGATACTCCCTCAGCTCCACCACCGAAAGGTTACAATGGTGGCCATTGTACCACCTTCAATGTGCTTGATTTTGGAGCTAAGGGAGATGGAAGCACAGATGATACAAAGGCCTTCGAAGCCGCATGGGCAGCTGCTTGTAAGGCAGAGGCATCGACAATGCTAGTCCCAGCAGACTACACCTTCTATGTGGGACCTATTTCATTCTCAGGGCCATATTGTAAATCCAACATTGTTTTTCAGCTTGATGGTACAATTATTGCTCCAACAAATCCCAATGCTTGGGCTGGAGGACTGCTACAATGGCTGGAATTCTCAAAGCTGGTGGGAATTACCATTCAAGGAAAGGGTGTCATTGATGGAAGAGGCTCTGTGTGGTGGCAAGACCAGCCGTATGATAACCCTATAGACGATGAAGAAAAGCTCATAGTCCCATTAAACCACACAGGGAGCCCACCATTGCCGATTCAAAGTGAGATGGGGAGAAAAATGCCGAGCATCAAGCCAACTGCACTGCGGTTTTATGGAAGTTTTAGTCCAACAGTGACGGGCATAACAATTCAAAACAGTCCTCAATGCCATCTCAAGTTTGACAACTGCAATGGGGTCCTGGTCCATGATGTGAGCATATCATCTCCTGGTGACAGCCCAAACACGGATGGAATTCACCTTCAGAACTCCAAAGATGTGTTGATTCACACCACCAAATTAGCATGTGGAGATGACTGTATTTCCATACAAACTGGATGCTCAAATGTATATGTACACAATGTCAACTGTGGGCCAGGACACGGAATCAGCATTGGAAGTTTAGGAAAGGATAACACCAGAGCCTGTGTCTCAAACATTACTGTCAGAGATGTCACAATGCATAACACAATGAATGGTGTCAGAATCAAAACATGGCAGGGTGGTTCAGGGTCTGTGCAAGGCGTACTATTCTCAAACATACAAGTATCTGAAGTTGAACTGCCAATAGTGATCGACCAATTCTATTGTGATAAAAGAACATGCACAAACCACACATCAGCGGTGTCACTGGCAGGAATCAACTACGAGAGAATAAAGGGGACTTACACGGTAAAGCCGGTTCACTTCGCCTGCAGCGATAGCCTGCCATGCGTGGATGTATCCTTGACCTCGGTCGACCTGAAACCGGTTCAGGAGCAATACCACCTCTACGACCCATTCTGCTGGCAGACTTACGGCGAATTAAGAACCCCCACAACCCCCCCAATTGCCTGCCTACAGATTGGCAAGCCTGCAAGTAACCGGATTCAAACCGATCATGATTTGTGTTAA 1563 0.4639 MSGLSLKGLTYMLAIAFLIWSANFETCIARRGRHWRHSSTVSASLFKKKGKTYSNSHNHHGGGSKQKPPTHKSTPPPLPKAPSSPPKVDTPSAPPPKGYNGGHCTTFNVLDFGAKGDGSTDDTKAFEAAWAAACKAEASTMLVPADYTFYVGPISFSGPYCKSNIVFQLDGTIIAPTNPNAWAGGLLQWLEFSKLVGITIQGKGVIDGRGSVWWQDQPYDNPIDDEEKLIVPLNHTGSPPLPIQSEMGRKMPSIKPTALRFYGSFSPTVTGITIQNSPQCHLKFDNCNGVLVHDVSISSPGDSPNTDGIHLQNSKDVLIHTTKLACGDDCISIQTGCSNVYVHNVNCGPGHGISIGSLGKDNTRACVSNITVRDVTMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSEVELPIVIDQFYCDKRTCTNHTSAVSLAGINYERIKGTYTVKPVHFACSDSLPCVDVSLTSVDLKPVQEQYHLYDPFCWQTYGELRTPTTPPIACLQIGKPASNRIQTDHDLC* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g0013 520 ProSitePatterns Polygalacturonase active site. 344 357 IPR000743 GO:0004650|GO:0005975
Aev05g0013 520 PANTHER - 6 510 - -
Aev05g0013 520 MobiDBLite consensus disorder prediction 52 69 - -
Aev05g0013 520 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 6 510 - -
Aev05g0013 520 MobiDBLite consensus disorder prediction 52 97 - -
Aev05g0013 520 MobiDBLite consensus disorder prediction 70 93 - -
Aev05g0013 520 Pfam Glycosyl hydrolases family 28 137 219 IPR000743 GO:0004650|GO:0005975
Aev05g0013 520 Pfam Glycosyl hydrolases family 28 254 472 IPR000743 GO:0004650|GO:0005975
Aev05g0013 520 Gene3D - 100 513 IPR012334 -
Aev05g0013 520 SUPERFAMILY Pectin lyase-like 105 518 IPR011050 -
Aev05g0013 520 SMART pbh1 367 388 IPR006626 -
Aev05g0013 520 SMART pbh1 287 313 IPR006626 -
Aev05g0013 520 SMART pbh1 337 357 IPR006626 -
Aev05g0013 520 SMART pbh1 396 417 IPR006626 -
Aev05g0013 520 SMART pbh1 314 335 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g0013 Aev-Chr5 115084 118615 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g0013 4 520 Glycoside Hydrolase AT1G60590 65.809 0.0 707
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g0013 - - gmx:732602 909.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev05g0013 05 115084 118615 Aev05g0013 05 115084 118615 ECH