LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aev04g3631	ATGGCATCAAAACCATCCAAGGCTAGCAGATCATCTATTTCAGCAACTTCTGATGCAAATGAAAGCCAGAAGCCTCCTTTACCTCCAACTGTAACATTCGGCAGAAGAACTTCTTCGGGTCGCTACATCAGTTACTCCAGAGATGATCTTGACAGCGAGCTAGGGAATAATGACTTCATGAATTACACGGTGCATTTACCACCAACCCCTGATAACCAACCTATGGATCCATCAATCTCTCAGAAAGTTGAGGAGCAATACGTGTCGAATTCTCTATTCACAGGTGGATTCAACAGTGTGACAAGAGCACACCTAATGGACAAAGTGATAGAATCTGAAACAAACCATCCACAGATGGCTGGTGCAAAAGGTTCCTCATGTGCAATACCTGGTTGTGATGGCAAGGTGATGAGTAACGAACGCGGCGTCGACATTCTTCCTTGTGAGTGTGATTTCAAGATATGCAGAGACTGCTACATAGATGCAGTTAAAACAGGTGGTGGAATATGCCCGGGATGCAAGGAATCATACAAGAACACAGAACTAGATGAAGTGGCTGCGGATAATGGAAGACCACTTTCACTTCCTCCACCAAGTGGAGTGTCTAAAATGGAGAGGAGGTTGTCCTTGATGAAATCGACGAAATCTGCTCTAATGAGAAGCCAAACCGGAGATTTCGACCACAACAGGTGGCTCTTTGAAACAAGAGGTACCTATGGTTATGGCAATGCTATATGGCCAAAGGAAGGGAATTTCGGAAATGGTGATGATGATGATAATGTTGCTGAGCCAGCCGAGTTTATGAGTAGACCTTGGAGGCCACTTACAAGGAAACTCAAGATACCTGCTGCTGTTCTTAGCCCATACCGTCTAATCATTCTTATTCGTTTGGTTGTGTTGGTACTCTTCCTGATATGGAGGATTCAAAACCCAAATACTGATGCAATCTGGCTATGGGGCATGTCTGTGGTTTGTGAGCTATGGTTTGCTTTTTCTTGGCTTCTGGATCAGCTGCCAAAGCTAAGCCCGGTGAATCGATCCACGGATCTTAATGTTCTCAAGGAGAAATTTGAAACACCAAGTCCTAATAATCCTACTGGAAAGTCTGATCTTCCTGGCATAGATGTCTTTGTCTCTACTGCTGACCCTGAGAAAGAACCACCTCTTGTCACTGCAAACACCATCTTGTCCATTTTAGCCGCTGATTTCCCGGTTGAGAAGCTTTCTTGCTATGTCTCTGATGATGGTGGTGCACTGCTAACTTTTGAGGCTATGGCTGAAGCTGCCAGCTTTGCTAATGTGTGGGTTCCTTTCTGTCGAAAACATGATATAGAGCCAAGGAATCCTGAATCATATTTCAACCTGAAAAGAGATCCTTACAAGAACAAAGTGAAACCAGATTTTGTGAAGGACCGAAGACGGGTGAAGCGTGAGTATGATGAGTTCAAGGTCAGGATCAATGGTCTGCCTGAATCGATCCGTCGCCGTTCTGATGCTTTTCATGCAAGGGAGGAGATCAAGGCCATGAAAGTTCAGAGACAGAATAGGGAAGATGAACCCATGGACCCTGTAAAGATTCCAAAAGCGACATGGATGGCTGATGGAACTCATTGGCCAGGGACATGGTTGAATCCTGCAACAGAACATTCTAAGGGTGACCATGCTGGTATAATTCAGGTGATGTTGAAACCTCCTAGTGATGAACCTCTCATTGGAACTGATGATCATACAAAGCTCATTGATTTGACTGATATTGATATTCGTCTTCCCCTTCTTGTTTACGTCTCCAGAGAGAAACGTCCAGGCTATGATCATAACAAGAAAGCAGGGGCCATGAACGCCCTGGTTCGAGCCTCGGCGATCATGTCCAATGGTCCTTTTATACTCAACCTTGACTGTGATCACTATATCTACAACTCAAAGGCAATGAGGGAAGGTATGTGCTTCATGATGGACCGTGGCGGTGACCGCCTTTGCTATGTCCAGTTCCCACAGAGGTTTGAGGGGATTGATCCTTCTGATAGATATGCTAACCACAATACCGTCTTCTTTGATGTCAACATGAGAGCCCTTGATGGACTCCAAGGCCCAGTTTATGTAGGAACCGGGTGTCTTTTCAGAAGGGTTGCCCTCTACGGTTTTGATCCACCGCGCTCCAAGGAACACCACTCAGGTTGCTGTAGTTGCTGCTTTGGCCGCCGTAAGAAGAATTCATCGATGGCAAACAATCCTGAAGATAACAGGTCACTAAGGATGGGTGATTCTGACGATAATGAAGAGATGAACATGTCATTGTTTCCCAAGAAGTTCGGAAACTCAAGTTTCCTCATTGACTCAATCCCAGTGGCAGAGTACCAAGGCAGGCCACTTGCTGATCATCCTGCAGTGAAGAACGGACGGCCACCAGGCGCTCTCACCATCCCTCGCGAGCTTCTTGATGCTTCAACCGTGGCTGAGGCCATCAGTGTCATCTCATGTTGGTACGAGGACAAGACCGAATGGGGGCGGCGTGTTGGATGGATCTATGGATCAGTCACTGAGGATGTTGTCACCGGTTATAGGATGCACAACAGAGGCTGGAAATCAGTTTATTGTGTGACAAAGCGCGACGCCTTCCGTGGAACTGCTCCAATCAATCTCACTGATAGGCTGCATCAGGTTCTCAGATGGGCTACCGGCTCAGTCGAGATTTTCTTCTCTAGGAACAATGCACTTCTAGCTAGCCCAAAGATGAAGTTTCTACAGCGAATCGCATACCTCAATGTTGGAATTTATCCATTCACTTCCATATTCCTCATTGTCTATTGCTTCCTCCCTGCACTTTCTCTCTTCTCAGGACAATTCATTGTGCAAACACTCAATGTCACATTCCTTGTTTACCTCTTAACCATCACAGTTACACTAAGCATGCTTGCTGTGCTAGAAATCAAGTGGTCCGGGATCGAGCTCGAAGAATGGTGGAGGAATGAGCAGTTTTGGCTGATTGGAGGGACAAGTGCACACCTTGCTGCTGTTCTCCAAGGCCTTCTCAAAGTCATAGCCGGCATCGAAATCTCGTTCACACTGACATCAAAATCTGGTGGTGATGATGTTGATGATGAGTTTGCTGATCTCTACATTGTGAAATGGACATCACTCATGATACCACCAATCACAATCATGATGGTTAACCTGATAGCAATAGCAGTTGGAGTTAGCAGAACCATATATAGTGAGATACCACAATGGAGCCGCTTACTAGGTGGTGTTTTCTTTAGCTTTTGGGTGTTGACTCATCTTTACCCTTTTGCAAAAGGTTTGATGGGAAGAAGAGGCAGAACTCCTACCATTGTTTTTGTATGGTCTGGTCTCATTGCAATCACAATATCACTTCTTTGGGTGGCAATCAATCCCCCAGCTGGTGCCAACAAAATTGGAGGTTCATTCCAGTTCCCATGA	3438	0.4567	MASKPSKASRSSISATSDANESQKPPLPPTVTFGRRTSSGRYISYSRDDLDSELGNNDFMNYTVHLPPTPDNQPMDPSISQKVEEQYVSNSLFTGGFNSVTRAHLMDKVIESETNHPQMAGAKGSSCAIPGCDGKVMSNERGVDILPCECDFKICRDCYIDAVKTGGGICPGCKESYKNTELDEVAADNGRPLSLPPPSGVSKMERRLSLMKSTKSALMRSQTGDFDHNRWLFETRGTYGYGNAIWPKEGNFGNGDDDDNVAEPAEFMSRPWRPLTRKLKIPAAVLSPYRLIILIRLVVLVLFLIWRIQNPNTDAIWLWGMSVVCELWFAFSWLLDQLPKLSPVNRSTDLNVLKEKFETPSPNNPTGKSDLPGIDVFVSTADPEKEPPLVTANTILSILAADFPVEKLSCYVSDDGGALLTFEAMAEAASFANVWVPFCRKHDIEPRNPESYFNLKRDPYKNKVKPDFVKDRRRVKREYDEFKVRINGLPESIRRRSDAFHAREEIKAMKVQRQNREDEPMDPVKIPKATWMADGTHWPGTWLNPATEHSKGDHAGIIQVMLKPPSDEPLIGTDDHTKLIDLTDIDIRLPLLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSKAMREGMCFMMDRGGDRLCYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGLQGPVYVGTGCLFRRVALYGFDPPRSKEHHSGCCSCCFGRRKKNSSMANNPEDNRSLRMGDSDDNEEMNMSLFPKKFGNSSFLIDSIPVAEYQGRPLADHPAVKNGRPPGALTIPRELLDASTVAEAISVISCWYEDKTEWGRRVGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLASPKMKFLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLVYLLTITVTLSMLAVLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSGGDDVDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGVSRTIYSEIPQWSRLLGGVFFSFWVLTHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAINPPAGANKIGGSFQFP*	1146

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aev04g3631	1145	PANTHER	CELLULOSE SYNTHASE-LIKE PROTEIN D3	34	1143	-	-
	Aev04g3631	1145	Pfam	Cellulose synthase	374	1135	IPR005150	GO:0016020\|GO:0016760\|GO:0030244
	Aev04g3631	1145	Gene3D	Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	575	715	IPR029044	-
	Aev04g3631	1145	MobiDBLite	consensus disorder prediction	737	758	-	-
	Aev04g3631	1145	MobiDBLite	consensus disorder prediction	1	38	-	-
	Aev04g3631	1145	Pfam	RING/Ubox like zinc-binding domain	129	178	-	-
	Aev04g3631	1145	PANTHER	X-BOX TRANSCRIPTION FACTOR-RELATED	34	1143	-	-
	Aev04g3631	1145	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	110	191	IPR013083	-
	Aev04g3631	1145	SUPERFAMILY	RING/U-box	111	181	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aev04g3631	Aev-Chr4	34019786	34023482	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aev04g3631	9	1145	Glycosyltransferase	AT3G03050	84.427	0.0	2026

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aev04g3631	K20924		-	gmx:100792604	2167.5

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aev04g3631	04	34019786	34023482	Aev05g1118	05	7830724	7834550	ECH
	Aev04g3631	04	34019786	34023482	Aev04g3631	04	34019786	34023482	ECH