Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g3467 ATGGCGGAAGAAGAGTACGAGAATGTTGAAGAAGAGTTCTTAGTTTGGAAGAAGAACACGCCGTTGTTGTACGACCTGGTTGTTTCGCACCCACTCACATGGCCTTCTCTTACTGTTCAATGGCTCCCATCTTCACCAGAGCCACACTCTCACCCTTCCTTCAACCTCCACAAGATCCTCTTCGCAACCCACACCTCAACCTCCGAACCCGAATTCCTCATCCTCGCCGATGTTGCTCTTCCCATCTCAACATCTCAGCCTGTAACTAACAACGATCCTGAAAACCTCGTTCTCCCCAAGGTGGAGGTTACACAAAGAATTCGGGTTGACGGGGAGGTGAATAGAGCGAGGAGTATGCCACAGAACCCTAGTGTTGTTGCGGCTAAGACTTGTGGTTCTGAGGTTTATGTGTTTGATGCTGAGAAGCAGCGCGGGAGGGAACAAGGGGGTGGTTGTGACCCAGATTTGAGGTTGAGGGGTCATGACAAAGAAGGGTATGGTTTGTCTTGGAGCTCTCTTAAGAAGGGGCATCTTTTGAGTGGTTCACAAGATGGTAAGGTTTGCCTGTGGGATGTGTTGGCTGCACCAGGGCAAGAGAATGTGCTTGATGCGGTTCATGTTTACGACAAGGCAAATGAGAGTGTGGTTGGAGATGTATGCTGGCACCCGAAGGATGAGAACATATTTGGCTCTGTTGGAGATGACGGCAAATTGGTAATTTGGGACTTGCGGGCAAACGAAGCCCAACAATCAGTCCAAGCACATGAGGATGAGGTCAACTTTCTGTCTTTCAATCCATTCAATGAATGGGTTGTGGCTACAGCATCTTCAGACAGTACCGTGGCTCTCTATGATACACGGAAGCTGGCACAATCACAACCATTGCACCTTTTATGCAGCCACACAGATGAGGTATACCAGGTGGAGTGGGATCCTAATCACGACGCGGTGTTGGCATCTTCTGGTGCTGATAGAAGGCTCATGGTTTGGGACCTTAACAGGGTTGGGGATGAGCAGATAGAGGGAGATGGTGAAGGAGGTCCTCCAGAGCTGCTATTTTCTCATGGAGGTCACAAGGGGAAGATATCAGACTTCTCATGGAACAAGAATATGCCATGGGTTATCGCAAGTGTGGCAGAGGATAATTCATTCCAAGTCTGGCAAATGGCTGAGAACATTTACAATGACGACGACGACGAAGATGACATTTGGTCGGCTGTTGATCAAAAGTAA 1233 0.4874 MAEEEYENVEEEFLVWKKNTPLLYDLVVSHPLTWPSLTVQWLPSSPEPHSHPSFNLHKILFATHTSTSEPEFLILADVALPISTSQPVTNNDPENLVLPKVEVTQRIRVDGEVNRARSMPQNPSVVAAKTCGSEVYVFDAEKQRGREQGGGCDPDLRLRGHDKEGYGLSWSSLKKGHLLSGSQDGKVCLWDVLAAPGQENVLDAVHVYDKANESVVGDVCWHPKDENIFGSVGDDGKLVIWDLRANEAQQSVQAHEDEVNFLSFNPFNEWVVATASSDSTVALYDTRKLAQSQPLHLLCSHTDEVYQVEWDPNHDAVLASSGADRRLMVWDLNRVGDEQIEGDGEGGPPELLFSHGGHKGKISDFSWNKNMPWVIASVAEDNSFQVWQMAENIYNDDDDEDDIWSAVDQK* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g3467 410 ProSiteProfiles Trp-Asp (WD) repeats profile. 252 287 IPR001680 GO:0005515
Aev04g3467 410 SUPERFAMILY WD40 repeat-like 102 392 IPR036322 GO:0005515
Aev04g3467 410 ProSitePatterns Trp-Asp (WD) repeats signature. 178 192 IPR019775 -
Aev04g3467 410 PRINTS G protein beta WD-40 repeat signature 318 332 IPR020472 -
Aev04g3467 410 PRINTS G protein beta WD-40 repeat signature 272 286 IPR020472 -
Aev04g3467 410 PRINTS G protein beta WD-40 repeat signature 178 192 IPR020472 -
Aev04g3467 410 ProSiteProfiles Trp-Asp (WD) repeats profile. 298 333 IPR001680 GO:0005515
Aev04g3467 410 Pfam WD domain, G-beta repeat 206 242 IPR001680 GO:0005515
Aev04g3467 410 Pfam WD domain, G-beta repeat 158 191 IPR001680 GO:0005515
Aev04g3467 410 Pfam WD domain, G-beta repeat 249 285 IPR001680 GO:0005515
Aev04g3467 410 Pfam WD domain, G-beta repeat 352 387 IPR001680 GO:0005515
Aev04g3467 410 Pfam WD domain, G-beta repeat 293 331 IPR001680 GO:0005515
Aev04g3467 410 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 11 81 IPR022052 -
Aev04g3467 410 PANTHER WD-40 REPEAT-CONTAINING PROTEIN MSI2-RELATED 3 402 - -
Aev04g3467 410 Gene3D - 2 407 IPR015943 GO:0005515
Aev04g3467 410 ProSiteProfiles Trp-Asp (WD) repeats profile. 355 389 IPR001680 GO:0005515
Aev04g3467 410 ProSiteProfiles Trp-Asp (WD) repeats profile. 209 251 IPR001680 GO:0005515
Aev04g3467 410 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 158 192 - -
Aev04g3467 410 ProSitePatterns Trp-Asp (WD) repeats signature. 318 332 IPR019775 -
Aev04g3467 410 SMART WD40_4 348 388 IPR001680 GO:0005515
Aev04g3467 410 SMART WD40_4 201 242 IPR001680 GO:0005515
Aev04g3467 410 SMART WD40_4 291 331 IPR001680 GO:0005515
Aev04g3467 410 SMART WD40_4 151 191 IPR001680 GO:0005515
Aev04g3467 410 SMART WD40_4 245 285 IPR001680 GO:0005515
Aev04g3467 410 ProSiteProfiles Trp-Asp (WD) repeats profile. 158 192 IPR001680 GO:0005515
Aev04g3467 410 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 298 333 - -
Aev04g3467 410 PANTHER WD40 REPEAT FAMILY 3 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g3467 Aev-Chr4 32938527 32940657 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g3467 224 390 Miscellaneous Gene Families AT5G08390 21.557 6.65e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g3467 K10752 - gmx:100791834 588.571