Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g3320 ATGGCTGTTTCTGCTCACTTGTGCTGTCGCCTCCCAACCACTCGCTCCGATCTTGCTTTGCCGGAGACCCTTTCGAAATTCCGATGCCGGAAGCCTCTCTCCGTCCGCTGCTGCTCCGGCAATTCCTCGCCATCGGTGGCGGTTGAGTCGGAGGAATTCGATGCCAAGGTGTTCAGGAAGAATCTCACCAGGAGCAAGAACTATAACCGTAAGGGTTTTGGTTACAAGGAGGAGACCCTTCAGCTCATGAATCGCGAGTACACAAGTGACATCATTAAGACTTTGAAGGAAAATGGGAATGAGTATACATGGGGCACTGTCACCGTGAGGCTGGCCGAATCATATGGCTTCTGCTGGGGAGTTGAGAGGGCTGTTCAAATCGCGTACGAGGCCAGGAAACAGTTTCCTAATGAGAACATATGGCTTACCAATGAGATCATCCACAACCCAACTGTTAATGAGAGATTGCAAAACATGAAAGTGCAAAACCTTCCTGTGGAAGAAGGTCAAAAACAATTTGAGGTTGTCAACAAGGGTGATGTCGTTATATTGCCTGCTTTTGGAGCAGCGGTGGATGAGATGCTGACTTTGAGCGAGAAAAACGTCCAAATTGTTGACACAACTTGCCCATGGGTTTCGAAGGTGTGGACTACTGTTGAAAAGCACAAGAAAGGAGATTATACCTCAATAATTCATGGTAAATATTCCCATGAGGAAACTGTAGCAACTGCATCTTTTGCTGGAAAGTACATTATTGTGAAGAACATGGCTGAGGCTGAGTATGTTTGTGACTATATTCTTGGTGGTGAATTAAATGGATCCAGCTCAACTAAAGAAGCATTTTTAGAGAAATTTAAGTATGCCGTTTCTGAGGGCTTTGATCCAGACAGGGACCTCGTGAAAGTTGGTATTGCAAATCAGACAACTATGCTCAAAGGAGAAACTGAAGAGATTGGGAAACTTGCCGAGAGGACTATGATGCGCAAATTTGGTGTAGAAAACGTCAATGACCACTTCATAAGCTTCAACACAATTTGTGATGCTACTCAGGAGCGACAAGATGCTATGTACAAGCTGGTAGAGGAAAATATGGATCTTATGTTAGTTGTTGGTGGATGGAACTCGAGCAACACATCGCACTTGCAAGAGATTGCTGAGGAACGCGGAATTCCTTCGTACTGGATCGACAGTGAGAAGAGAGTCGGTCCAGGAAACAAAATAGCACACAAGCTGATGCATGGTGAGCTGGTAGAGAAAGAAAACTGGTTGCCAAAGGGTCCAATAACAATTGGTGTTACATCTGGTGCATCCACACCAGACAAGGTTGTTGAGGATGTGCTTATCAAGGTATTCGACTTGAAACGCGAGGAAGCATTGCAACTTGCATAG 1389 0.4536 MAVSAHLCCRLPTTRSDLALPETLSKFRCRKPLSVRCCSGNSSPSVAVESEEFDAKVFRKNLTRSKNYNRKGFGYKEETLQLMNREYTSDIIKTLKENGNEYTWGTVTVRLAESYGFCWGVERAVQIAYEARKQFPNENIWLTNEIIHNPTVNERLQNMKVQNLPVEEGQKQFEVVNKGDVVILPAFGAAVDEMLTLSEKNVQIVDTTCPWVSKVWTTVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMAEAEYVCDYILGGELNGSSSTKEAFLEKFKYAVSEGFDPDRDLVKVGIANQTTMLKGETEEIGKLAERTMMRKFGVENVNDHFISFNTICDATQERQDAMYKLVEENMDLMLVVGGWNSSNTSHLQEIAEERGIPSYWIDSEKRVGPGNKIAHKLMHGELVEKENWLPKGPITIGVTSGASTPDKVVEDVLIKVFDLKREEALQLA* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g3320 462 Gene3D - 209 342 - -
Aev04g3320 462 TIGRFAM ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 109 449 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Aev04g3320 462 Gene3D - 343 461 - -
Aev04g3320 462 Gene3D - 118 208 - -
Aev04g3320 462 CDD lytB_ispH 109 447 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Aev04g3320 462 PANTHER 4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE, CHLOROPLASTIC 1 460 - -
Aev04g3320 462 Pfam LytB protein 109 448 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Aev04g3320 462 Hamap 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 107 454 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g3320 Aev-Chr4 32132678 32135771 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g3320 K03527 - gmx:100818067 821.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev04g3320 04 32132678 32135771 Aev04g3320 04 32132678 32135771 ECH