Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g3301 ATGTTAGTAGAGCGAAACGCGGGTATACGCAGGCCTACGCTAGGCGCAATCATGCACTCCGATCCCACGTCCTTTCACACTCCAAACCACGACAACCACCACCACCACCGTGTGACCACCGCCTCCGCCGCCAGCCCCCGGAACAACACCAACTACTACGGCGGCGACAATACGAGCAGCAGCAGCAACAATGCCTCACCTTACATGTCCCCATGGAACAATAACCACCAATTAGCTACTTCTTCCTCTCCCTATAACAAATCCCCATGGCTCTTACCCTCACCCGCAGCAATCAGCCTCTTCCACCACGATAACAATAACAACAACCACCAAAACGGCCTAATCGGCTCCCTCGTCCGCGAAGAAGGCCACATCTACTCCCTCGCCGTCGCCGGCGACTTGCTCTACACCGGATCCGACAGCAAGAACATTCGCGTTTGGAAAGATCTCAAGGACTACACCGGGTTCAAATCGAGCTCTGGGTTAGTCAAAACAATTGTTATCTCCGGCGAGAAAATCTTCACCGGCCATCAAGACGGTAAAATCAGAGTCTGGAAGGTTTCTTCCAAGGACCCAACCAACCACAGGAGAATCGGAAGCTTGCCCACTTTTAAGGAATTCGTTAAGAGTTCAATGAATCCGAAGAACTACGTTGAGATTCGAAGGCATCGAAACGCGGTGAAGGTGAAGCATTTCGATGCCGTTTCGAGCTTGAGCTTGGATGACCAAGCTGGGTTGTTGTACAGCGCTTCGTGGGATAAGACGATTAAGGTTTGGAGGATTTCCGATTCGAAGTGCTTGGAATCGATCAACGCTCACGACGATGCCGTTAACGCCGTGGTTGCGGCGTTTGAGGGGTTGGTTTTAACTGGATCTGCCGATGGGACGGTGAAGGTGTGGCGGAGGGAACAGGGGAGTAAGAAGACGAGGCACGTCATGGATACGATTCTGTTGAGGCAGGAGAACGCCGTCACCGCGCTGGCCGTTAACCGTTTATCGGCGGTGGTTTACGGCGGTTCGTCGGACGGGTTGGTGAATTTCTGGGAGAGGGACGGGAAGAGCGGAGGGCTTTCTCACGGCGGCGTTCTGAGGGGACACAAGCTCGCCGTGTTGTGCCTCGCGGCGGCCGGGAACTTGGTGTTCAGCGGCTCCGCCGATAAGAATATTGTCGTGTGGAAGCGCGATGAAAGTGGGATCCACACGTGTCTTTCGGTGCTCACCGGCCACACGGGGCCGGTGAAGTGTATTGCCGTGGAGGAAGAAGAAGAGGAGGAGGAGGAGGGTCAACGCGGGAAAGTTGACCAAGGGTGGATTGTTTACACCGGGAGCTTGGATAAGTCGGTGAAGGTGTGGCGCGTGTCTGAACACGCGCCGGAGTTGACGATGATTCAAGAGTGGCCCACTCCGAGTCGCGGCGCGGCGGCGAATGATTCCTCGTCCGCAGCAGTAGTGTTGAGTCCGTATTCTTCGCCGATAACGAATTATGCAGTTAGTGCTAACAGCATTAATGCCAAAAGTGCTGATTGTAACGTTGCTAACAGCAATCTCATCAACAAGCTCCAAGGCAATGGCAATTGTGGTGCGTACCAAAACAGGATGAGGCAGTTGTAA 1611 0.54 MLVERNAGIRRPTLGAIMHSDPTSFHTPNHDNHHHHRVTTASAASPRNNTNYYGGDNTSSSSNNASPYMSPWNNNHQLATSSSPYNKSPWLLPSPAAISLFHHDNNNNNHQNGLIGSLVREEGHIYSLAVAGDLLYTGSDSKNIRVWKDLKDYTGFKSSSGLVKTIVISGEKIFTGHQDGKIRVWKVSSKDPTNHRRIGSLPTFKEFVKSSMNPKNYVEIRRHRNAVKVKHFDAVSSLSLDDQAGLLYSASWDKTIKVWRISDSKCLESINAHDDAVNAVVAAFEGLVLTGSADGTVKVWRREQGSKKTRHVMDTILLRQENAVTALAVNRLSAVVYGGSSDGLVNFWERDGKSGGLSHGGVLRGHKLAVLCLAAAGNLVFSGSADKNIVVWKRDESGIHTCLSVLTGHTGPVKCIAVEEEEEEEEEGQRGKVDQGWIVYTGSLDKSVKVWRVSEHAPELTMIQEWPTPSRGAAANDSSSAAVVLSPYSSPITNYAVSANSINAKSADCNVANSNLINKLQGNGNCGAYQNRMRQL* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g3301 536 Pfam WD domain, G-beta repeat 122 148 IPR001680 GO:0005515
Aev04g3301 536 Pfam WD domain, G-beta repeat 231 259 IPR001680 GO:0005515
Aev04g3301 536 Pfam WD domain, G-beta repeat 401 451 IPR001680 GO:0005515
Aev04g3301 536 Pfam WD domain, G-beta repeat 361 393 IPR001680 GO:0005515
Aev04g3301 536 Pfam WD domain, G-beta repeat 265 300 IPR001680 GO:0005515
Aev04g3301 536 SUPERFAMILY WD40 repeat-like 117 467 IPR036322 GO:0005515
Aev04g3301 536 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 4 467 IPR045182 -
Aev04g3301 536 PANTHER EN/SPM-LIKE TRANSPOSON PROTEIN-LIKE 4 467 - -
Aev04g3301 536 Gene3D - 218 353 IPR015943 GO:0005515
Aev04g3301 536 SMART WD40_4 263 301 IPR001680 GO:0005515
Aev04g3301 536 SMART WD40_4 309 349 IPR001680 GO:0005515
Aev04g3301 536 SMART WD40_4 149 186 IPR001680 GO:0005515
Aev04g3301 536 SMART WD40_4 356 393 IPR001680 GO:0005515
Aev04g3301 536 SMART WD40_4 225 260 IPR001680 GO:0005515
Aev04g3301 536 SMART WD40_4 399 452 IPR001680 GO:0005515
Aev04g3301 536 SMART WD40_4 111 148 IPR001680 GO:0005515
Aev04g3301 536 MobiDBLite consensus disorder prediction 39 68 - -
Aev04g3301 536 CDD WD40 122 452 - -
Aev04g3301 536 Gene3D - 57 215 IPR015943 GO:0005515
Aev04g3301 536 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 228 265 - -
Aev04g3301 536 ProSiteProfiles Trp-Asp (WD) repeats profile. 228 269 IPR001680 GO:0005515
Aev04g3301 536 ProSiteProfiles Trp-Asp (WD) repeats profile. 270 310 IPR001680 GO:0005515
Aev04g3301 536 ProSiteProfiles Trp-Asp (WD) repeats profile. 363 393 IPR001680 GO:0005515
Aev04g3301 536 Gene3D - 354 501 IPR015943 GO:0005515
Aev04g3301 536 PRINTS G protein beta WD-40 repeat signature 288 302 IPR020472 -
Aev04g3301 536 PRINTS G protein beta WD-40 repeat signature 247 261 IPR020472 -
Aev04g3301 536 PRINTS G protein beta WD-40 repeat signature 439 453 IPR020472 -
Aev04g3301 536 MobiDBLite consensus disorder prediction 16 68 - -
Aev04g3301 536 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 270 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g3301 Aev-Chr4 32033986 32035596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g3301 229 451 Miscellaneous Gene Families AT5G08390 24.889 2.05e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g3301 - - adu:107476730 669.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev04g3301 04 32033986 32035596 Aev04g3301 04 32033986 32035596 ECH