LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aev04g3238	ATGGCATTCATCAACAACGGAATAGTTCTCATTCTTCTTCTTCTCATCTCTATAATTGGATCATCCATAATAACCCTCACACAAGCTTATTTTGCACCTTCTTCTGATGTGGCTTCCTTCAATAGGTCACATTTCCCCACTGGCTTCATCTTTGGCACTGCATCCTCAGCTTACCAGTATGAAGGTGCAGCAAGCGAAGGTGGAAGAGGACCAAGTATATGGGATACGTTCACCCATAAGTATCCTGAAAAGATAAAGGATGGAGACAGTGGAGACGTAGCCATTGACTCATACCATCGCTACAAGGAAGATGTAGGGCTGATGAAGGATATGAATTTAGATGCTTATAGATTTTCCATCTCTTGGTCAAGGATATTGCCAAAAGGGAAACTAAGTGGTGGTATAAATCAAGAAGGAATCGACTATTACAACAACCTCATCAATGAGTTGGTTGCAAATGGTCTACAACCATTTGTGACCCTTTTCCATTGGGATCTTCCCCAAGCCTTAGAAGATGAATACGGTGGCTTCTTAAGCCCTCTCATCATAAAAGATTTTCAAGAGTATGCGGAAGTATGCTTCAAGGAATTTGGTGATAGAGTGAAGCATTGGATAACTCTGAATGAGCCATGGAGTTATAGTAGAAATGGGTATGCAATAGGGACTATGGCACCAGGTCGCTGTTCTTCTTGGTTCAATCCAAATTGCACCGGCGGTGATTCTGCCACTGAACCCTACATTGTCTCACACTACCAACTTCTTGCTCATGCTTCAGCCGTTAATGTCTATAAGACCAAGTTTCAGGAATCTCAGAAAGGGGTGATAGGCATAACGTTGCTAGCTACATGGTTCGTGTCATATTCGGATAGCAAACTTGACCAAAAGGCTGCTGAACGAGCTGTTGACTTCATGTATGGATGGTTTATGGATCCACTTACAAGAGGGGATTATCCACAAAGCATGAGATCATTGGTGAGAGCAAGATTACCAAGGTTCACTAATGAGCAAGCAAGGCTAGTTCGTGGCTCATTTGATTTTATTGGCTTAAATTATTACTCTGCTGGCTATGCTTCAGATGCACCTCAATTACGCAATGATAGACCTAACTATGAAACTGATTCACTTTACGGCTTGTCATTTGTGCGGAACGAGAAACCCATTGGTCTAAGGCTTGCTTCAGACTGGTTGTACGTCTATCCAAAAGGGCTTCAAGATCTTTTGTTATACACCAAGCAAAAGTACAACAATCCCTTGATTTATATCACTGAAAATGGTATAAATGAATATAATGATCCATCATTATCGGTTCAGGAATCTCTTCTTGATACTTTTAGAATCGATTATTACTATCGTCACCTGTATTATCTTGGATCAGCAATCAAGAATGGTGCAAATGTGAAGGGTTATTTTGCATGGTCTTTGCTAGACAACTTTGAATGGCATTTAGGCTACACCGTGCGATTTGGAATGACTTTTGTGGATTACAAACATGGTTTAGAAAGATATCAAAAGCTCTCTGCAATATGGTTCAAGGATTTTTTAAAAACGGAAATTAAACTTTACAGTAGTTCCCAATAA	1578	0.403	MAFINNGIVLILLLLISIIGSSIITLTQAYFAPSSDVASFNRSHFPTGFIFGTASSAYQYEGAASEGGRGPSIWDTFTHKYPEKIKDGDSGDVAIDSYHRYKEDVGLMKDMNLDAYRFSISWSRILPKGKLSGGINQEGIDYYNNLINELVANGLQPFVTLFHWDLPQALEDEYGGFLSPLIIKDFQEYAEVCFKEFGDRVKHWITLNEPWSYSRNGYAIGTMAPGRCSSWFNPNCTGGDSATEPYIVSHYQLLAHASAVNVYKTKFQESQKGVIGITLLATWFVSYSDSKLDQKAAERAVDFMYGWFMDPLTRGDYPQSMRSLVRARLPRFTNEQARLVRGSFDFIGLNYYSAGYASDAPQLRNDRPNYETDSLYGLSFVRNEKPIGLRLASDWLYVYPKGLQDLLLYTKQKYNNPLIYITENGINEYNDPSLSVQESLLDTFRIDYYYRHLYYLGSAIKNGANVKGYFAWSLLDNFEWHLGYTVRFGMTFVDYKHGLERYQKLSAIWFKDFLKTEIKLYSSSQ*	526

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aev04g3238	525	ProSitePatterns	Glycosyl hydrolases family 1 N-terminal signature.	49	63	IPR033132	-
	Aev04g3238	525	ProSitePatterns	Glycosyl hydrolases family 1 active site.	419	427	IPR018120	-
	Aev04g3238	525	SUPERFAMILY	(Trans)glycosidases	33	515	IPR017853	-
	Aev04g3238	525	PRINTS	Glycosyl hydrolase family 1 signature	463	480	IPR001360	GO:0004553\|GO:0005975
	Aev04g3238	525	PRINTS	Glycosyl hydrolase family 1 signature	487	499	IPR001360	GO:0004553\|GO:0005975
	Aev04g3238	525	PRINTS	Glycosyl hydrolase family 1 signature	343	357	IPR001360	GO:0004553\|GO:0005975
	Aev04g3238	525	PRINTS	Glycosyl hydrolase family 1 signature	419	427	IPR001360	GO:0004553\|GO:0005975
	Aev04g3238	525	PRINTS	Glycosyl hydrolase family 1 signature	442	453	IPR001360	GO:0004553\|GO:0005975
	Aev04g3238	525	Pfam	Glycosyl hydrolase family 1	43	516	IPR001360	GO:0004553\|GO:0005975
	Aev04g3238	525	PANTHER	GLYCOSIDE HYDROLASE FAMILY 1 PROTEIN	10	520	-	-
	Aev04g3238	525	PANTHER	GLYCOSYL HYDROLASE	10	520	IPR001360	GO:0004553\|GO:0005975
	Aev04g3238	525	Gene3D	Glycosidases	29	516	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aev04g3238	Aev-Chr4	31650215	31653786	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aev04g3238	9	510	Glycoside Hydrolase	AT5G42260	55.467	0.0	578

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aev04g3238	-		K01188	gmx:100820528	853.973