Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g3162 ATGCACGCTCTCATCAGAGCCACATCATTTTTCAGAACGAGCACCGCCACCCACCACCGCTACTTCCGATCAGACCCATCATTCTATGCCGAACTCATCGAAACCTACGCTCGCGATCGAGCGCTGCGCGACGGAAAGAAGCTCCACGCCCACCTAATCACCAATGGCTTCTTCCGTTTCAACGTTGTCGTTTCCAACCTCGTATCGTTCTATGCTTCCTGTGGCCAACTCTCCCACGCCCGGAAGCTGTTCGACAAAATTCCCACAACAAATATACGCCGTTGGATTGCATTTATCGGAACATGTGCTCGTTGTGGGTTCCACGACCACGCCATCGCCGTGTTCTCCGAGATGCAGGGTTCCCACGCGCCGGACCACAACAGCGTTTTCGTTATTCCGAGCGTTCTCAAAGCTTGCGGCCACTTAGGGGACAGAATCACCGGAGAGAAGATACATGGGTTGATTCTGAAGTGTTGTTTCGAGAGTGATGCTTTTGTGTCGAGCTCGTTGATTGTTATGTACTCGAAGTGCGCCAGAGTTGAGGATGCGCGGAAGGTGTTTGATGGAATGGCTGTGAAGGACTTGGTTTCTTTAAACGCTGTTGTTGCTGGGTATGCTCAATTGGGGCTTGGGAGTGATGCTTTGGGCTTAGTGGAGGAGATGAGGTTGATGGGTTTGAAGCCGAATTTGGTTACTTGGAACAGTTTGCTGTCTGGGTTTTCACAAAAATGTGACCTTGCTATGGTTTCTGAGATTTTCAGGTTGATGGTTGAAGATGGTATTGAGCCTGATGTGGTGTCTTGGACTTCTGTTATATCAGGGCTTGTGCAGAATATTCGAAATGAGGAAGCTTTTGACATGTTTAAGAAAATGTTGCTTAATGGGATCTGCCCAACTTCGGCTACTATCAGCACCCTTCTTCCTGCATGTGCCACTGCAGCAAGAGTAATGATTGGGAAAGAAATTCATGGCTATGCGGTGGCGATTGGGGTGGAGGAAGATATATATGTGAGGAGCGCACTTGTTGACATGTATGCAAAATGTGGATTCATTTCTGAAGCGAGGACACTGTTTTGCATGATGCCTGAGAAGAACACGGTTACATGGAACTCTATCATTTTTGGATATGCCAATCATGGGTATTGTGATGAAGCCATAGAACTCTTCAACCAGATGGAGATGGAAGGGAAAGCCAAGTTGGATCATTTGACTTTCACGGCGGCTCTCACTGCATGCAGCCATGTTGGGGATATCGAACTCGGGCAGAGTCTGTTCAATACTATGCAAGAAAAGTATCGCATTGAGCCAAGGCTGGAGCATTATGCATGCATGGTGGATCTTCTAGGACGAGCAGGGAAACTCGAGGAGGCATATAGCATGATCAAGGCAATGCCTATTGAGGCTGATTTATTTGTGTGGGGTGCATTGCTGGCTGCTTGCAGAAATCATGGGCATGTGGAACTTGCAGAAGTTGCTGCGAAGCATTTGTTGGAGTTGGAGCCCGAGAGTGCTGGGAACCGTCTTCTGTTGTCCAGTGTATACGCTGATGCTGGCAAGTGGGCAAAGGTTGAGAGGATCAAGAAAAGGATGAAGAAGGGAAAACTCAGAAAATTTCAAGGGTTGAGTTGGATAGATAATGTATAA 1644 0.4781 MHALIRATSFFRTSTATHHRYFRSDPSFYAELIETYARDRALRDGKKLHAHLITNGFFRFNVVVSNLVSFYASCGQLSHARKLFDKIPTTNIRRWIAFIGTCARCGFHDHAIAVFSEMQGSHAPDHNSVFVIPSVLKACGHLGDRITGEKIHGLILKCCFESDAFVSSSLIVMYSKCARVEDARKVFDGMAVKDLVSLNAVVAGYAQLGLGSDALGLVEEMRLMGLKPNLVTWNSLLSGFSQKCDLAMVSEIFRLMVEDGIEPDVVSWTSVISGLVQNIRNEEAFDMFKKMLLNGICPTSATISTLLPACATAARVMIGKEIHGYAVAIGVEEDIYVRSALVDMYAKCGFISEARTLFCMMPEKNTVTWNSIIFGYANHGYCDEAIELFNQMEMEGKAKLDHLTFTAALTACSHVGDIELGQSLFNTMQEKYRIEPRLEHYACMVDLLGRAGKLEEAYSMIKAMPIEADLFVWGALLAACRNHGHVELAEVAAKHLLELEPESAGNRLLLSSVYADAGKWAKVERIKKRMKKGKLRKFQGLSWIDNV* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g3162 547 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 194 228 IPR002885 -
Aev04g3162 547 Pfam PPR repeat 168 191 IPR002885 -
Aev04g3162 547 Pfam PPR repeat 196 225 IPR002885 -
Aev04g3162 547 Pfam PPR repeat 97 120 IPR002885 -
Aev04g3162 547 Pfam PPR repeat 231 261 IPR002885 -
Aev04g3162 547 Pfam PPR repeat 441 464 IPR002885 -
Aev04g3162 547 Pfam PPR repeat 63 87 IPR002885 -
Aev04g3162 547 Pfam PPR repeat family 364 413 IPR002885 -
Aev04g3162 547 Pfam PPR repeat family 263 311 IPR002885 -
Aev04g3162 547 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 229 263 IPR002885 -
Aev04g3162 547 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 264 298 IPR002885 -
Aev04g3162 547 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 40 120 - -
Aev04g3162 547 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 89 546 - -
Aev04g3162 547 Gene3D Tetratricopeptide repeat domain 396 546 IPR011990 GO:0005515
Aev04g3162 547 Gene3D Tetratricopeptide repeat domain 211 318 IPR011990 GO:0005515
Aev04g3162 547 Gene3D Tetratricopeptide repeat domain 4 144 IPR011990 GO:0005515
Aev04g3162 547 Gene3D Tetratricopeptide repeat domain 319 395 IPR011990 GO:0005515
Aev04g3162 547 Pfam E motif 483 545 IPR046848 -
Aev04g3162 547 PANTHER OS03G0271300 PROTEIN 40 120 - -
Aev04g3162 547 PANTHER OS03G0271300 PROTEIN 89 546 - -
Aev04g3162 547 SUPERFAMILY TPR-like 321 504 IPR011990 GO:0005515
Aev04g3162 547 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 365 399 IPR002885 -
Aev04g3162 547 TIGRFAM PPR: pentatricopeptide repeat domain 367 396 IPR002885 -
Aev04g3162 547 TIGRFAM PPR: pentatricopeptide repeat domain 266 299 IPR002885 -
Aev04g3162 547 TIGRFAM PPR: pentatricopeptide repeat domain 231 265 IPR002885 -
Aev04g3162 547 TIGRFAM PPR: pentatricopeptide repeat domain 196 229 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g3162 Aev-Chr4 31148352 31149995 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g3162 29 545 Glycoside Hydrolase AT3G49170 32.072 6.62e-90 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g3162 - - aip:107629077 914.064