Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g3090 ATGATCTTTCAAGGAGCAAAATCCATTAACCCAAACCTAGCTCGATTACTCCATCAGTATGCGAAAAAACCTCGAACTCAAAATGCGTCATCTTCATCTTCTTCATCAAAATTTCCCAATAATCGCAACAATGATCGAAATCGAAAGCGAATCGCTTTCATCACAGAACTCAAAGATCTTCAAGACCCAGATCAAGCCCTATCACTTTTTCACGATTACAAGGATCGCGGTTTCAGACATGACTACCCTTCTTATGCTGCATTACTCTATAAGCTCGCACGTTCTAGAAGCTTCGATTCCGTTGAAACCCTTCTCAGTCACATCCAACAAAAATCCATTCGCTGCAGAGAGAGCCTCTTCGTCGCACTCTTCCAACACTATGGAAAATCATCGCTTCCCGAAAAGGCCACTGAACTGTTTCACCGAATGCCGAATTTTAACTGTGCCCGAACATTGCAGTCTTTAAACGCGCTTCTTAACGTTTTGGTTGATAGCGACCGGTTCGATGAGGCCAATGATGTTTTTTTGAGGTCCTATGAAATGGGGTTTCGTCCAAACACGGTTACTTTCAATGTTATGATGAAGGGGTGGTTGGGGAAAGGTGAGTTTGGGAAAGCGTGTGAGGTGTTTGATGAAATGCTTCAGAGGAAGGTGCAGCCTAGTGTTGTGACTTATAACAGTTTAATTGGGTTTTTGTGTAGAAAGGGTGATTTGGATGAAGCAATGACCTTGCTTGAGGATATGAACAAGAAAGGGAAGTATGCAAATGAGGTGACTTATGGACTTTTGATGGAAGGGTTGTGCAAGGCAGAGAAGTATGATGAAGCTAAGAAGCTATTGTTTGATATGGCGTATCGTGGGTGTAAGCCTCGGCTTGTGAATTTCAGTGTTCTGATGAATGATTTAGGAAGGAGAGGGAGGATCGAGGAGGCGAAGGCTATGCTTCACGAAATGAAGAAGAGGCGGATGAAGCCGGATGCTGTGACGTATAACATATTGGTTAATTATCTTTGTAAAGGAGGGAAGGCAGCGGAGGCTTACAAGGTGTTGATTGAAATGCAGATTGGGGGCTGTGAGCCGAACGCGGCGACGTATAGGATGATAGTTGATGGTTTGTGCAGGGTTGGGGATTTTGAGTTGGGCCTGAGTGTTTTGAATGCAATGCTAAGTAGTGGACATTGCCCCCGTCCTGAAACGTTTAACTATTTGGTAGTTGGGTTGTTAAAGTCTGGGAATGTTGATGGTGCTTGCTTTGTGTTGGAAGAGATGGAGAAGAGGAAAGAGGAATTCGACTTCGAGAGCTGGGAAACTATAGTACAGTGGTGTGTTTGCAGTGAGGATAAGGGTATAAGTAGGCTTATGACTGAACTTACATCTCTATCCAATGCATTAGGTAAGTCAAGTACTCCAATGGCACACCTTGAATTTCTTCCAAAGCCCTTGAATACCATAATCTTTCTATCATGCATATTCCTTGCACTCACTTCCACAACTACATCAACCCGAATCCTTATTTCTGAGGTAGGAACACAATCCACAGCACCACAAGAACCTGATCCTGCTGTTGTGTCCCCAGTTTCTCCCATTGTCCCTCCATTGGTAACACCTTCACCTGTTGCAGCAGCCACCGCAACAAGTGCTGCAGCAGTCACCAATACTAATGATCAGCATCATACACTCTCATTCTTCATGCACGAAATTCTTGGAGGTTCTAACCCCTCAGCAAGAGCCGTAACCGGAGTTGTTACCAACCCTGCCCTCAATGCTCAAGTCGCCTTCGCTAAGCCGAATGGGGCGAACCTTCCCATCAACACCGGCATCCCGCAGAACAACAACAACAATGGCCTCCTCAACAACAACAACCTCCCTTTCCTCACCGGCCTCGGCGGAACAACAGCAAATGTTTTCAACAACAGAGGAAACAACAACAACCTACTCAATGGTGGTATCGGATTCCCAGTTGGAAACACCAATCAGCTCCCTGAAGGAATGACACTGGAGAAGTTGATGTTTGGGACAATGACTGTGTTTGATGATGAAATAACAGAAGGGCAAGAATTAGGATCAGGTTTGTTGGGGAAAGCACAAGGATTCTACATAGCAAGTTCTGTGGATGGAACAAGCCAAGTAATGGCTTTCACTGCAAAGTTTGAGGAGAATGGTTATGCTGATAGTATAAGCTTCTTTGGTGTGCACCAAACACAAATTTCTGAATCAAAACTTGCAATCATTGGAGGTACTGGAAAATATGTTAATGCTGAGGGATTTGCTATTATTAAGACATTTCCTGTTAATGGTCAACAGCATAATACTGATGGAGTGGAGACTCTGGTGGAGCTCACAGCTTATCTTGCATATTAG 2361 0.4422 MIFQGAKSINPNLARLLHQYAKKPRTQNASSSSSSSKFPNNRNNDRNRKRIAFITELKDLQDPDQALSLFHDYKDRGFRHDYPSYAALLYKLARSRSFDSVETLLSHIQQKSIRCRESLFVALFQHYGKSSLPEKATELFHRMPNFNCARTLQSLNALLNVLVDSDRFDEANDVFLRSYEMGFRPNTVTFNVMMKGWLGKGEFGKACEVFDEMLQRKVQPSVVTYNSLIGFLCRKGDLDEAMTLLEDMNKKGKYANEVTYGLLMEGLCKAEKYDEAKKLLFDMAYRGCKPRLVNFSVLMNDLGRRGRIEEAKAMLHEMKKRRMKPDAVTYNILVNYLCKGGKAAEAYKVLIEMQIGGCEPNAATYRMIVDGLCRVGDFELGLSVLNAMLSSGHCPRPETFNYLVVGLLKSGNVDGACFVLEEMEKRKEEFDFESWETIVQWCVCSEDKGISRLMTELTSLSNALGKSSTPMAHLEFLPKPLNTIIFLSCIFLALTSTTTSTRILISEVGTQSTAPQEPDPAVVSPVSPIVPPLVTPSPVAAATATSAAAVTNTNDQHHTLSFFMHEILGGSNPSARAVTGVVTNPALNAQVAFAKPNGANLPINTGIPQNNNNNGLLNNNNLPFLTGLGGTTANVFNNRGNNNNLLNGGIGFPVGNTNQLPEGMTLEKLMFGTMTVFDDEITEGQELGSGLLGKAQGFYIASSVDGTSQVMAFTAKFEENGYADSISFFGVHQTQISESKLAIIGGTGKYVNAEGFAIIKTFPVNGQQHNTDGVETLVELTAYLAY* 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g3090 786 MobiDBLite consensus disorder prediction 23 41 - -
Aev04g3090 786 Pfam PPR repeat family 325 374 IPR002885 -
Aev04g3090 786 Pfam PPR repeat family 220 269 IPR002885 -
Aev04g3090 786 Gene3D - 653 780 IPR044859 -
Aev04g3090 786 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 186 220 IPR002885 -
Aev04g3090 786 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 151 185 IPR002885 -
Aev04g3090 786 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 221 255 IPR002885 -
Aev04g3090 786 MobiDBLite consensus disorder prediction 22 45 - -
Aev04g3090 786 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 23 460 - -
Aev04g3090 786 Pfam Dirigent-like protein 656 783 IPR004265 -
Aev04g3090 786 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 326 360 IPR002885 -
Aev04g3090 786 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 361 395 IPR002885 -
Aev04g3090 786 Pfam PPR repeat 121 148 IPR002885 -
Aev04g3090 786 Pfam PPR repeat 295 322 IPR002885 -
Aev04g3090 786 Pfam PPR repeat 399 426 IPR002885 -
Aev04g3090 786 Pfam PPR repeat 188 217 IPR002885 -
Aev04g3090 786 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 256 290 IPR002885 -
Aev04g3090 786 TIGRFAM PPR: pentatricopeptide repeat domain 364 395 IPR002885 -
Aev04g3090 786 TIGRFAM PPR: pentatricopeptide repeat domain 328 362 IPR002885 -
Aev04g3090 786 TIGRFAM PPR: pentatricopeptide repeat domain 223 254 IPR002885 -
Aev04g3090 786 TIGRFAM PPR: pentatricopeptide repeat domain 258 290 IPR002885 -
Aev04g3090 786 TIGRFAM PPR: pentatricopeptide repeat domain 399 429 IPR002885 -
Aev04g3090 786 TIGRFAM PPR: pentatricopeptide repeat domain 295 327 IPR002885 -
Aev04g3090 786 TIGRFAM PPR: pentatricopeptide repeat domain 188 221 IPR002885 -
Aev04g3090 786 Gene3D Tetratricopeptide repeat domain 203 320 IPR011990 GO:0005515
Aev04g3090 786 PANTHER OS05G0548600 PROTEIN 23 460 - -
Aev04g3090 786 Gene3D Tetratricopeptide repeat domain 52 202 IPR011990 GO:0005515
Aev04g3090 786 Gene3D Tetratricopeptide repeat domain 321 471 IPR011990 GO:0005515
Aev04g3090 786 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 291 325 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g3090 Aev-Chr4 30642095 30645147 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g3090 61 448 Miscellaneous Gene Families AT4G11690 27.595 1.09e-43 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g3090 - - cic:CICLE_v10030177mg 831.247