Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g3072 ATGGATGAAAAAGCGAAACCCAAGAGCGTTACCTTCACAAAGCAACCCTACATTGAAGATGTTGGCCCTCGCAAAATAAAGAGCATTAAGTTCAGCACGTTATCAGAGTCAGAGATTGCAAAGATTGCGGAAGTTCAAGTGTATAAAGGTTCATACTATAATTCGGAAAGGAAGGCCATCCATGGCGGCTTGTTGGATCCTCACATGGGCCCTGCTAATTGTAAAGAGAAACATCTTGTGTGCGCGACATGCCATGGGAGATGGTTTTTTTGTCCGGGGCACTATGGATACTTACCCCTTGCCCTTCCCGTTTTCAATGTTGGATTCTTGGGTACAATTGTGGAAATACTGAAGTCCATCTGTAAGGGATGTGCTCGTATTCTCCTCATTGAAAATATACGCAAAGAACATTTGAAGAAAATGAGAAACCCCAAACTCGAGGCACTAACGAAGATCGATTTAGCAAAAAAAGTTGTAGAACTATGTAGCAAAGTAATGAGGTGCTCTAGATGTGGATATTTGAATGGTTCAGTAAAGAAGGTTGTGGGTACACTAAGAATCACTCATGACCGCTCAAAATGTAGTGATAGTAGTGTTGAAGAGTTCCAATCAGCCCTTTCTCATACAAGAGAATCTAAGGCGACCAACAACATGGATACTCATATTCTTAACCCTTTCATTGCTCTTTCCCTGTTCAAAAGGATGCCTGATGAGGACTGTGAATTACTTTTTCTTGGTGATAGACCAGAAAAATTCATCATCACAAATCTTGCGGTTCCCCCTATTGCTGCTCGACCTTCTGTTATACAAGATGGATCACAAAGCAATGAAAATGACTTAACAGAGAGGCTAAGGCAAATAATTCAAGCTAATGCTGTTGTGCGCCAAGAATTAGAAGAATCAAGTGGTTCATTCAAATATCTGGATGGCTGGGAAATGCTTCAATTTGAGGTTGCTCAATTCATAAATAGTGATGTTCGTGGTATACCGTACAGTATGCAACAAGCCAAGCCGAAAGCCGGTTTGGTTCAGCGCCATAAAGGGAAGCAGGGACGTTTTCGTGGCAACTTATCTGGGAAACGTGCTGAATATACTGGGAGGACAGTTATTTCACCAGATCCTAATTTAAAGATTTCTGAGGTTGCGTTACCCATCCATATGGCTCGCATTTTGACTTACCCCGAGCGTGTTTCACATCACAACATTGAGAAGCTAAGACAATGTGTTAGAAATGGTGCTGATAAGTATCCTGGTGCAAAGATGATTATTCATGTTGGAGGTTTGGAAAGGGGCTTACACATTCCTGCGAGGAAGAAAATTGCAGATGAGCTGAGATATGGGGATATTGTTCATCGCCATTTGGAAGATGGTGACGTTGTTCTTTTCAATAGGCAGCCAAGTTTGCATCGGATGTCTATAATGTGTCATAGGGCAAGGATTATGCCTTGGAGAACTTTGAGATTCAATGAGTCTGTATGCAACCCATATAATGCTGACTTTGATGGTGATGAGATGAACATACATGTCCCACAGACTGCGGAGGCCCGGACGGAGGCTATTTTGTTGATGGGGGTGCAAAACAATTTATGCACACCTAAAAATGGTGAAATTTTGGTTGCCTCTACCCAAGACTTTTTAACCTCTTCCTTTCTCATAACAAGAAAAGATACTTTTTATGATCGTTCTACATTTTCACTTATTTGTTCATACATGGGGGATGGTATGGATGTTGTTGATCTGCCAACTCCTGCAATTATCAAGCCAGTTGAGCTTTGGAGTGGTAAACAGTTATTTAGCATTCTGTTGCGCCCACATGCAAATGTGAGGGTCTATGTAAATCTTACTGTTAAGGAGAAAATATACAGCACAAAGCTTGATGACAGAAAAAGAGAACCGAAAACAATGTGCCCGAATGATGGGTTCGTATATTTTCGCAATAGTGAGTTGATATCTGGACAGCTTGGAAAGGTGACTTTAGGCAATGGAAATAAGGATGGGCTTTTTTCTGTTCTATTAAGAGACTATAAAGCACATGCTGCTGCTTCTTGCATGAATCGTCTAGCTAAATTGAGTGCTCGATGGATAGGCAATCATGGGTTCTCAATAGGCATTGATGATGTCCAACCAAAAGAGATTTTGATCAACAAGAAAGATGAAACAATATCTGATAATTACAAAAAATGTGATGACTTCATAGAAGCTTTCAATAAAGGAAAGCTAGAACTGAAAGCTGGTTGTGATGCTGCTCAGACATTAGAGACTCTGATAACTGGTGTATTGAATGGTGTACGAGATACAGCTGGGAAGGTTTGCATGCAAACTCTACATTGGAGAAATAGTCCATTGATCATGTCACAGTGTGGCTCCAAAGGATCTCCTATTAATATCAGTCAGATGGTTGCATGTGTTGGTCAACAATCAGTTGGAGGTCGTCGTGCTCCTAATGGGTTCATGGAACGTAGCCTTCCTCATTTCCCTAGAAAAGCAAAAACCCCTGCTGCTAAAGGTTTTGTTGCTAATTCTTTTTACAGTGGATTGTCTGCTACTGAGTTTTTCTTCCACACAATGGGAGGGAGAGAAGGTCTTGTTGATACAGCGGTTAAAACTGCAGACACTGGATACATGTCTCGTAGGTTAATGAAGTGTATGGAGGATTTGTTTTTACATTATGATTACACTGTACGAAATACTGGTGGTGGTGTTGTTCAATTCTGCTATGGAGATGATGGCATGGATCCTGTAGGCATGGAAGGAAAAAATGGAAAACCATTAAATTTTGAGCGGTTGTTTCTCAGAAGCAAGGCCATATGTCCAAGTGATGGAGATGATGATATCTTATCTTCCTCAGATGTGCATAAAGTAGTTCAAGAGAAGCTTTCAGAGGCTGGTATGTCTAGGTTAGCAGAGAACGGGGTTTCAGAGGATGATATACTGTCAGAGAGGGGCTCATCTGCTGACTTCATAAATTCTCTCCTATCCTTTATCAAAGATAAAATAGAATTAACTGAAGAAGTTTCCACTGTGGATGATTCTGAAAATCTGAAAAAATTTATTGAGAGGATATCTGGGATTACTCGAAGACAACTACAGGTTTTTCTTGATATTTGTTTATCTCGCTACCGTTCGAAAAAAATCGAGGCCGGAACTCCTATCGGTGCAATTGGAGCTCATAGTATTGGAGAGCCTGGGACCCAGATGACTTTAAAGACTTTTCACTTTGCAGGGGTTGCAAGCATGAATGTGACTCTTGGAGTTCCTCGTATTAAAGAAATTATTAATGGAGCTAAAAACATTAGTACGCCAATCATCACTGCAATACTTGAGACTGGTGATAATGCAAATACTGCAAGGATAGTAAAAGGTCGCATAGAAAAAACTAATTTAGGCCAGGTTGCAAAGAGTATTAAAGTAGTTATGACATCAAGATTGGCATCAATTGTCATCACACTTGACATGGAAAGAATTCATGACGCACATCTTCATATAGATGCTAATATTGTAAAAGAATCAATTTTGCAAACTCCAAAACTAAAATTGAAGCAAGAGCACATTAAGATTTTGGATATCAAAAAGCTTGCAGTTGTTCCCCCAGATGCTGATAGAAGTAAAATCCAATTTCAACTCCACTATCTCAAGAATTTGCTTCCATCAATTGTTGTAAAGGGAATCAAAACTGCTGAACGAGTTGTTATCAGTAAAGAAGAAGATAAAGAGACGAAGGTTGAGAAGTTCAAATTACTGGTGGAAGGCACGGGCCTTCTAAATGTTATGGGAATTGAAGGTGTTGATGGTCGTAAAACTGTTAGTAATCATATCGATGAAGTGCAAAACACTCTAGGAATTGAAGCTGCTAGAAAGTGTATCATTGAGGAAATCAAGTTTACTATGGGAAGTCACGGAATGAGTATAGATGTACGCCATATGATGCTCCTAGCAGATGTGATGACTGTCATGGGTAAAGTCCTTGGAATAACAAGATTTGGAATTCAAAAGATGGGGAAAAGTGTGTTAATGCTTGCATCCTTTGAAAGAACATCTGATCATCTTTTCAATGCATCCGTACGTGGGATGGATGACCAGATTCAAGGAATAAGTGAATCCATAATCATGGGTGTACCAGTTCACATAGGCACTGGAATGATCAAGGTCAAACAACGGTTGGATCCTCCGGAGTTGTCTTATGGACCCGCTCCTCTTCTGTCTTGA 4206 0.402 MDEKAKPKSVTFTKQPYIEDVGPRKIKSIKFSTLSESEIAKIAEVQVYKGSYYNSERKAIHGGLLDPHMGPANCKEKHLVCATCHGRWFFCPGHYGYLPLALPVFNVGFLGTIVEILKSICKGCARILLIENIRKEHLKKMRNPKLEALTKIDLAKKVVELCSKVMRCSRCGYLNGSVKKVVGTLRITHDRSKCSDSSVEEFQSALSHTRESKATNNMDTHILNPFIALSLFKRMPDEDCELLFLGDRPEKFIITNLAVPPIAARPSVIQDGSQSNENDLTERLRQIIQANAVVRQELEESSGSFKYLDGWEMLQFEVAQFINSDVRGIPYSMQQAKPKAGLVQRHKGKQGRFRGNLSGKRAEYTGRTVISPDPNLKISEVALPIHMARILTYPERVSHHNIEKLRQCVRNGADKYPGAKMIIHVGGLERGLHIPARKKIADELRYGDIVHRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNIHVPQTAEARTEAILLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRSTFSLICSYMGDGMDVVDLPTPAIIKPVELWSGKQLFSILLRPHANVRVYVNLTVKEKIYSTKLDDRKREPKTMCPNDGFVYFRNSELISGQLGKVTLGNGNKDGLFSVLLRDYKAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPKEILINKKDETISDNYKKCDDFIEAFNKGKLELKAGCDAAQTLETLITGVLNGVRDTAGKVCMQTLHWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFMERSLPHFPRKAKTPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKCMEDLFLHYDYTVRNTGGGVVQFCYGDDGMDPVGMEGKNGKPLNFERLFLRSKAICPSDGDDDILSSSDVHKVVQEKLSEAGMSRLAENGVSEDDILSERGSSADFINSLLSFIKDKIELTEEVSTVDDSENLKKFIERISGITRRQLQVFLDICLSRYRSKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAKNISTPIITAILETGDNANTARIVKGRIEKTNLGQVAKSIKVVMTSRLASIVITLDMERIHDAHLHIDANIVKESILQTPKLKLKQEHIKILDIKKLAVVPPDADRSKIQFQLHYLKNLLPSIVVKGIKTAERVVISKEEDKETKVEKFKLLVEGTGLLNVMGIEGVDGRKTVSNHIDEVQNTLGIEAARKCIIEEIKFTMGSHGMSIDVRHMMLLADVMTVMGKVLGITRFGIQKMGKSVLMLASFERTSDHLFNASVRGMDDQIQGISESIIMGVPVHIGTGMIKVKQRLDPPELSYGPAPLLS* 1402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g3072 1401 CDD RNAP_III_RPC1_N 34 895 IPR035697 -
Aev04g3072 1401 Pfam RNA polymerase Rpb1, domain 5 845 1335 IPR007081 GO:0003677|GO:0003899|GO:0006351
Aev04g3072 1401 PANTHER DNA-DIRECTED RNA POLYMERASE SUBUNIT 10 1395 - -
Aev04g3072 1401 SMART rpolaneu7 250 553 IPR006592 GO:0003677|GO:0003899|GO:0006351
Aev04g3072 1401 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 19 1386 - -
Aev04g3072 1401 Gene3D RNA polymerase Rpb1, domain 3 533 706 IPR042102 -
Aev04g3072 1401 Pfam RNA polymerase Rpb1, domain 4 733 838 IPR007083 GO:0003677|GO:0003899|GO:0006351
Aev04g3072 1401 Gene3D - 825 883 - -
Aev04g3072 1401 PANTHER DNA-DIRECTED RNA POLYMERASE 10 1395 IPR045867 GO:0003899|GO:0006351
Aev04g3072 1401 Pfam RNA polymerase Rpb1, domain 2 359 525 IPR000722 GO:0003677|GO:0003899|GO:0006351
Aev04g3072 1401 Gene3D - 707 824 IPR038120 -
Aev04g3072 1401 Gene3D - 1336 1381 - -
Aev04g3072 1401 CDD RNAP_III_Rpc1_C 1039 1381 IPR035698 -
Aev04g3072 1401 Pfam RNA polymerase Rpb1, domain 3 528 707 IPR007066 GO:0003677|GO:0003899|GO:0006351
Aev04g3072 1401 Gene3D RNA polymerase ii 392 452 - -
Aev04g3072 1401 Gene3D RNA polymerase II, clamp domain 15 143 IPR044893 -
Aev04g3072 1401 Pfam RNA polymerase Rpb1, domain 1 24 357 IPR007080 GO:0003677|GO:0003899|GO:0006351
Aev04g3072 1401 Gene3D - 885 935 - -
Aev04g3072 1401 Gene3D - 350 532 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g3072 Aev-Chr4 30468374 30494668 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g3072 K03018 - gmx:100811292 2203.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev04g3072 04 30468374 30494668 Aev04g3072 04 30468374 30494668 ECH