Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g2917 ATGGCTCCGATTCCGTCGGAGAACGGCGTCGATGGAGACGACGAGAGAGAAGAAGAAGAAGAGGAAGAGGAGGAAGAACAAGAAAATGAAGAGGAAGAGGAAGAAGAGGAGCCAAGGCTCAAGTACCAGAGAATGGGAGGGAGCATACCGTCGCTGCTCGCCGCCGATGCGGCGTCGTGCGTCGCCGTCGCGGAGCGCATGATCGCACTTGGCACGCAAGGCGGCACCATTCACATCCTCGATTTTCTCGGCAATCAGGTGAAGGAATTTCCTGCCCATGCTTCTGTTGTCAACGACCTTAGCTTTGACATAGAAGGGGAATATATAGGAAGCTGCTCTGATGATGGATCGGTAGTTATAAACAGCCTTTTCACAGATGAGAAAATGAAGTTTGAGTACCAACGACCAATGAAGACGGTTGCACTGGACCCGTATTATTCAAGGAATGCATCCAGGAGATTTGTTGCCGGTGGTTTAGCAGGTCATTTGTATTTGAATTCAAAGAAATGGTTGGGATATCGCGACCAGGTTTTACACTCTGGCGAAGGTCCAATACATGCTGTGACGTGGAGAACAAGTCTTGTTGCTTGGGCAAATGATGCAGGGGTGAAGGTTTATGATACCGCCACTGACCAGCGGATAACATTTATTGAAAGACCACATGGGAGCCCACGCCCTGAGCTTCTGCGTCCTCACCTGGTTTGGCAGGATGATACCCTCTTGGTTATTGGCTGGGGAACATCGGTCAGAATTGTGTCTCTAAGGACAAATTCCCATAAAGCTGCCAATGGGACATACAGGCAAGTTCCTTTGTCTGGTATGGCGCAGGTGGATATTGTGGCATCTTTTCAGACTGGCTATTTCATCTCAGGGCTCGCCCCCTTTGGTGATACTTTGGTAGTTTTAGCTTATATTCCTGGAGAAGATGGAGATAAGGATTTTAGTAGCACTGCTCCTTCACGGCAGGGAAATGCTCAAAGACCAGAAGTAAGAGTAGTAACATGGAATAATGAAGAACTCTCAACTGATGCTCTACCAGTACATGGGTTTGAGCATTACAAGGCAAAGGACTATTCTCTTGCTCATGCTCCTTTCTCAGGTAGCAGTTATGCTGGTGGTCAGTGGGTTGAAGGTGATGAGCCACTTTACTACATTGTATCCCCAAAAGATGTAGTTATTGCAAAGCCAAGGGATACAAAAGATCATATTGCTTGGCTTCTTCAACATGGCTGGCATGAAAAAGCTTTGGCTGCAGTTGAATCTGGTCAAGGACGGAGTGAACTACTTGATGAGGTAGGATCTAGGTATCTAGATCATCTAATTGTGGAAAGAAAATACGGTGAAGCAGCTTCTCTGTGTCCCAAGTTGCTGCGAGGGTCAGCTTCAGCATGGGAGAGATGGGTTTTTCACTTTGCACACCTGCGTCAACTCCCTGTTTTAGTTCCATCTATGCCAACAGAAAACCCCAGACTTCGCGATACTGCTTATGAGGTTGCTCTTGTAGCATTGGCTACAAATCCATCTTATCATAAGGATCTCTTGTCCACTGTTAAATCATGGCCATCTGTAATTTATTCTGCATTACCTGTGATTTCAGCCATTGAACCTCAGCTCAATACTTCGTCGATGACTGATTCGCTCAAGGAGGCACTGGCAGAGTTGTATGTTATCGATGGGCAATATGAAAAGGCCTTTTCATTGTATGCCGATCTTTTGAAGCCAGAAGTCTTTGATTTCATTGATAAATACAACCTACATGACGCAATTCGTGAGAAGGTTGTCCAACTGATGATGCTAGATTGCAAGCGTGCAGTTCATCTGTTAATCCAGAATAGGGACTTGATAAGTCCACCTGAAGTTGTGAAGCAACTTCTAAATGCTGATGCGAAGTGTGACTACAGATATTATTTACATTTATATCTTCATTCACTATTTGAAGTCAATCCAAATGCTGGGAAAGACTTTCATGATATGCAGGTAGAACTCTATGCGGATTATGATCCAAAGATGCTGTTACCTTTTCTTCGTAGCAGTCAGCACTATACTCTTGAGAAGGCCTATGAAATTTGCATTAAAAGAGACCTAACGAGGGAGCAAGTCTTCATCTTAGGAAGAATGGGAAACTCAAAGCAAGCTCTAGCCGTTATAATAAATAAATTAGAGGATATAGCAGAGGCTGTTGAGTTTATCACCATGCAGAATGATGATGAACTTTGGGAAGAACTAATCAAGCAATGCCTTGACAAACCAGAAATGGTGGGCATGCTATTGGAGCACACAGTTGGAAATCTTGATCCCCTCTACATTGTAAATAAGGTTCCCAATGGATTGGAAATACCTCGGCTCAGGGATCGGCTGGTTAAAATTATCACTGATTACAGAACTGAAACTTCCCTTAGACATGGTTGCAATGATATCCTTAAGGCTGACTGTGTCAATCTCTTGATCAAGTACTACAAAGAGGCAAGGCATGGAATTTCTTTAGGTAATGAAGATGAGCTGCGAATTAAAAGTCGTGATGCTCACGCTTCTCAGGCATCCGAGAAATCCCCTAATCCGAGAACCATGGAGGTGAAGTCAAAGACTAGGGGAGGTGGAAGATGTTGTATATGCTTTGACCCTTTCTCCATACAGAATATATCAGTGGTTGCTTTCTTTTGCTGCCATGCTTATCACACAACTTGTCTCACGGATTCGTCATACACTAGTAATAGCAAGAGAGGAATTAGAGCCAATTCCCAAGAAGCAGAAACATATGATGATTACAATGGCTATATGGATCATGATTATAGCGATGATGATGATTATGATGAAAGCAAGTTGGGTGGTCCTCGAATGCGTTGTATATTGTGTACTACTGCTGCTAGTTGA 2871 0.4403 MAPIPSENGVDGDDEREEEEEEEEEEQENEEEEEEEEPRLKYQRMGGSIPSLLAADAASCVAVAERMIALGTQGGTIHILDFLGNQVKEFPAHASVVNDLSFDIEGEYIGSCSDDGSVVINSLFTDEKMKFEYQRPMKTVALDPYYSRNASRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPIHAVTWRTSLVAWANDAGVKVYDTATDQRITFIERPHGSPRPELLRPHLVWQDDTLLVIGWGTSVRIVSLRTNSHKAANGTYRQVPLSGMAQVDIVASFQTGYFISGLAPFGDTLVVLAYIPGEDGDKDFSSTAPSRQGNAQRPEVRVVTWNNEELSTDALPVHGFEHYKAKDYSLAHAPFSGSSYAGGQWVEGDEPLYYIVSPKDVVIAKPRDTKDHIAWLLQHGWHEKALAAVESGQGRSELLDEVGSRYLDHLIVERKYGEAASLCPKLLRGSASAWERWVFHFAHLRQLPVLVPSMPTENPRLRDTAYEVALVALATNPSYHKDLLSTVKSWPSVIYSALPVISAIEPQLNTSSMTDSLKEALAELYVIDGQYEKAFSLYADLLKPEVFDFIDKYNLHDAIREKVVQLMMLDCKRAVHLLIQNRDLISPPEVVKQLLNADAKCDYRYYLHLYLHSLFEVNPNAGKDFHDMQVELYADYDPKMLLPFLRSSQHYTLEKAYEICIKRDLTREQVFILGRMGNSKQALAVIINKLEDIAEAVEFITMQNDDELWEELIKQCLDKPEMVGMLLEHTVGNLDPLYIVNKVPNGLEIPRLRDRLVKIITDYRTETSLRHGCNDILKADCVNLLIKYYKEARHGISLGNEDELRIKSRDAHASQASEKSPNPRTMEVKSKTRGGGRCCICFDPFSIQNISVVAFFCCHAYHTTCLTDSSYTSNSKRGIRANSQEAETYDDYNGYMDHDYSDDDDYDESKLGGPRMRCILCTTAAS* 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g2917 956 SMART WD40_4 171 207 IPR001680 GO:0005515
Aev04g2917 956 SMART WD40_4 83 122 IPR001680 GO:0005515
Aev04g2917 956 Pfam Region in Clathrin and VPS 608 751 IPR000547 GO:0006886|GO:0016192
Aev04g2917 956 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 608 755 IPR000547 GO:0006886|GO:0016192
Aev04g2917 956 MobiDBLite consensus disorder prediction 11 36 - -
Aev04g2917 956 Gene3D - 7 279 IPR015943 GO:0005515
Aev04g2917 956 PIRSF Vps41 1 908 IPR016902 GO:0034058|GO:0046907
Aev04g2917 956 SUPERFAMILY WD40 repeat-like 56 257 IPR036322 GO:0005515
Aev04g2917 956 SUPERFAMILY RING/U-box 861 905 - -
Aev04g2917 956 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 41 HOMOLOG 1 955 - -
Aev04g2917 956 SMART ring_2 868 951 IPR001841 -
Aev04g2917 956 MobiDBLite consensus disorder prediction 1 41 - -
Aev04g2917 956 Gene3D Tetratricopeptide repeat domain 549 818 IPR011990 GO:0005515
Aev04g2917 956 Coils Coil 10 37 - -
Aev04g2917 956 MobiDBLite consensus disorder prediction 839 863 - -
Aev04g2917 956 PANTHER VACUOLAR PROTEIN SORTING VPS41 1 955 IPR045111 GO:0006623
Aev04g2917 956 SMART CLH_2 608 755 IPR000547 GO:0006886|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g2917 Aev-Chr4 28965100 28972738 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g2917 K20184 - gmx:100804340 1658.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev04g2917 04 28965100 28972738 Aev04g2917 04 28965100 28972738 ECH