Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g1925 ATGATGGTGGAGGAGGTCTCAACAACAAAAGGGTGGTTTCAAAACTACAACTTAGACTTGAAAAGTATTTTGCCAGCAATATTGGCATCACACAAGACCCTTTTTGCATTCCTTTGGGTAGCTGCATTTGGCTCTGCTTTCTTGTGGCAAAGGAATGCACTTGGTGGGTTCTTGGTGTTGGGAGGAGAGGCTGTTCTGAGTTCTTCTTCATCAGTGCCTAAGCTTAGGGCTGTGGCATTCAGTTTGGTGGAATTTGGTGGGGTTGGTGATGGTGTTACCCTCAACACTGAGGCATTTCAGAAGGCTGTTTCTGCAATTTCAAGGTTTGGAGATAAGGGTGGTGGCCAGTTGAATGTGCCACCTGGTCTGTGGCTTACAGCACCTTTTAATCTCACCAGCCATATGACCCTTTTTCTGGCTGAAGATGCTGTCATCCTTGGAATTCAGGATGAAAAGTGTTGGCCATTGGTGCCAGCACTGCCTTCATATGGCTATGGAAGGGAACATCCTGGGCCTAGATACACCAGTTTGATCCATGCTCAAAATCTTACTGATGTTGTCATAACAGGGCATAATGGTACCATAAATGGACAGGGACAAACATGGTGGACAAAATATCTGAAAAAGCTTCTGAATCACACAAGGGGGCCACTGGTTCAGATCTTATGGTCTAGTGACATTGTGATCTCTAATATTACCTTGCGAGACTCTCCTTTTTGGACACTTCATCCATATGACTGCAAGAATGTAACCATTAAAAACCTTACAATATTGGCTCCTGTATATCATGCTCCAAATACTGATGGCATAGATCCTGATTCTTGTTCGGATATGTTGATAGAGGACTGTTACATAAGTGTAGGGGATGATGCAATTGCAATAAAAAGTGGGTGGGATCAGTACGGAATTGCTTATGCAAAGCCTTCAAAGAATATAGTAATCCGAAACCTTGTTGTTCGATCTAATGTTAGTGCTGGCATATCAATAGGGAGTGAAATGTCAGGTGGAGTATCCAATGTCACGGTGGAGAACATCCTCGTATGGCAATCGAGGCGCGCCATTCGGATCAAGACGGCCCCGGGAAGAGGTGGCTATGTCACCCAAATAACATACAGAAACTTAACATTCAACAATTGCAGGGTTGGAATTGTAATCAAGACAGATTACAACCAGCACCCTGATGCAGGATATGATCCTAAAGCACTTCCACTGCTCAAGGACATAAGCTTCACCGGCATCCGCGGCCACAGGGTGCGGGTGCCGGTGCGCATCCAAGGCAGTGAAGAGATTCCAGTTTGGAATGTGACATTCAAGGATATGTCAGTTGGTATAACATCAAAAAAGAAGCATATATTCCAGTGTGGATTTGTTCATGGACAGGTAATAGGGACCATATTTCCTGCACCTTGTGAGAACTTTGATCAGTACAATGAGCAAGGGCAAATAGTTAAGCATGCTGCACCATCGAATGTAACAGACATAGATTATGAAATTTGA 1497 0.4409 MMVEEVSTTKGWFQNYNLDLKSILPAILASHKTLFAFLWVAAFGSAFLWQRNALGGFLVLGGEAVLSSSSSVPKLRAVAFSLVEFGGVGDGVTLNTEAFQKAVSAISRFGDKGGGQLNVPPGLWLTAPFNLTSHMTLFLAEDAVILGIQDEKCWPLVPALPSYGYGREHPGPRYTSLIHAQNLTDVVITGHNGTINGQGQTWWTKYLKKLLNHTRGPLVQILWSSDIVISNITLRDSPFWTLHPYDCKNVTIKNLTILAPVYHAPNTDGIDPDSCSDMLIEDCYISVGDDAIAIKSGWDQYGIAYAKPSKNIVIRNLVVRSNVSAGISIGSEMSGGVSNVTVENILVWQSRRAIRIKTAPGRGGYVTQITYRNLTFNNCRVGIVIKTDYNQHPDAGYDPKALPLLKDISFTGIRGHRVRVPVRIQGSEEIPVWNVTFKDMSVGITSKKKHIFQCGFVHGQVIGTIFPAPCENFDQYNEQGQIVKHAAPSNVTDIDYEI* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g1925 498 Gene3D - 62 458 IPR012334 -
Aev04g1925 498 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 24 496 - -
Aev04g1925 498 SUPERFAMILY Pectin lyase-like 68 472 IPR011050 -
Aev04g1925 498 SMART pbh1 427 448 IPR006626 -
Aev04g1925 498 SMART pbh1 247 274 IPR006626 -
Aev04g1925 498 SMART pbh1 366 387 IPR006626 -
Aev04g1925 498 SMART pbh1 337 358 IPR006626 -
Aev04g1925 498 SMART pbh1 275 296 IPR006626 -
Aev04g1925 498 SMART pbh1 309 331 IPR006626 -
Aev04g1925 498 Pfam Glycosyl hydrolases family 28 175 457 IPR000743 GO:0004650|GO:0005975
Aev04g1925 498 PANTHER PECTIN LYASE-RELATED 24 496 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g1925 Aev-Chr4 16031834 16036681 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g1925 2 498 Glycoside Hydrolase AT1G19170 69.941 0.0 731
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g1925 - - adu:107479176 844.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev04g1925 04 16031834 16036681 Aev04g1925 04 16031834 16036681 ECH
Aev01g2743 01 30063219 30067373 Aev04g1925 04 16031834 16036681 PCT