Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g1439 ATGATGCTCACAATCTTCTTGGTATTTTCTCTCTTCTCATTCTCCCACGCTTCGGTGGTAGACTTTTGCGTCGCGGATTTCACGTTCCCCAATGGCCCTGCAGGATACTCCTGCAAGAAGCCATCTAAGGTCACTGTAGACGATTTCGCCTACAGTGGCCTTGCTGCCCCAGGGAACACCTCGAACATCATAAAAGCTGCGGTGACCCCAGCTTTTGATGCTCAATTCCCTGGTGTCAACGGCCTCGGAGTCTCCATCGCACGTTTGGACTTGGCTCCGGGTGGAGTGATACCACTCCACACACACCCTGGAGCATCAGAAATACTTGTTGTGGTTCAAGGAACAATCTGTGCTGGGTTTGTTTCTTCCGACAACTCTGTTTACCTTAAAACACTCAAAAAGGGTGATGTTATGGTGTTCCCTCAGGGATTGTTGCACTTCCAGATTAACTCTGGTGGGACCCAGGCTCTGGCATTTGTGAGCTTCGGAAGTGCCAATCCTGGTCTTCAGATTTTGGACTTTGCTTTGTTCAAAAGTGATTTCCCAACGGAATTGATTACAGGAACCACTTTTCTTGATGCTGCTCAGGTGAAGAAGCTTAAGGGTGTTCTTGGAGGTTCGGGTTAA 627 0.4864 MMLTIFLVFSLFSFSHASVVDFCVADFTFPNGPAGYSCKKPSKVTVDDFAYSGLAAPGNTSNIIKAAVTPAFDAQFPGVNGLGVSIARLDLAPGGVIPLHTHPGASEILVVVQGTICAGFVSSDNSVYLKTLKKGDVMVFPQGLLHFQINSGGTQALAFVSFGSANPGLQILDFALFKSDFPTELITGTTFLDAAQVKKLKGVLGGSG* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g1439 208 CDD cupin_OxOx 15 204 - -
Aev04g1439 208 Pfam Cupin 53 197 IPR006045 -
Aev04g1439 208 SMART Cupin_1_3 52 198 IPR006045 -
Aev04g1439 208 ProSitePatterns Germin family signature. 95 108 IPR019780 GO:0030145
Aev04g1439 208 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 7 204 - -
Aev04g1439 208 SUPERFAMILY RmlC-like cupins 19 202 IPR011051 -
Aev04g1439 208 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 1 7 204 - -
Aev04g1439 208 PRINTS Germin signature 130 150 IPR001929 GO:0030145
Aev04g1439 208 PRINTS Germin signature 100 120 IPR001929 GO:0030145
Aev04g1439 208 PRINTS Germin signature 163 178 IPR001929 GO:0030145
Aev04g1439 208 Gene3D Jelly Rolls 16 207 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g1439 Aev-Chr4 10212905 10213531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g1439 1 207 Miscellaneous Gene Families AT5G20630 70.192 5.80e-102 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g1439 - - gmx:100806553 336.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev04g1439 04 10212905 10213531 Aev04g1439 04 10212905 10213531 ECH