Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g1304 ATGGCAACTGAGAGTCCAATTAGAATTTCGGAAGCTGGGGTTAAGTGGCCCTCTCTTAAGGAAGCTGCAACCCTAGGTTCACCGGCTCGTAACATGGCAACAGAAGATTTAGGTATACTTTTAAAGGGGCATAGGTTCCATGGTAGTGGAAAGGATGTGGCAGTGGCACCCAATCGCAGTGGAAGTGCACCTCCCAGCATGGAAGGCTCCTTTCTTGCTATAGAAAACCTATTGTCCCAGCAGAACACCACCCAGAACACAAGCTTGGAAACTCTAAACAGAGCTATGCAAAAGTGTGAATCTGAAGAACAATTGCGAGCTGATCCAGCTTATTTGGCATATTACAGTTCCCATGTCAACCTAAATCCTAGACTTCCACCCCCACTTATTTCCCGGGAAAATCGCCATCAAATTGGTGGTCTCAGGAATAAATGGGGATTTTCTTCGGCAGATCATAGCAGTAAAAGTTCTTCACATATGTCACAAGGGACTCTTGCGACACACAGGGAGGAGTCTGAGGATGATTCACCGAGTGGACCGGATGCAGCTGCTTCATTACCATCACAGAATAAAAATGTGGTTGACTTAATTCAGGAAGATTTTCCCCGTACCATGTCACCTGTATATAATAAGTCACATTCTGCAAGTCATGGACTGGTGAATGAACCAATTGACTTAGATGCTGGTTCCAGTTCCTCTTATGATTCCCCTGCCACTGCATCAGAGGTTGCTAAACCTACTGTAGGCGCAGATGATATAAGGGTGTCATCAACTGTTGGCATCCATGCCGCTCTTGCAAGCTCATCATCTCTTGGATCCACAGGCAGCGTGGGTTTTAATGACTTAGATGTTTCAACTGTTGAGTCTCAACTAAAGGCTCTTAGTGTATCTAATCTACCAAATTCAGAAAGCCTAAGTTATCAGAATAATTTAATTCAACACCAGATATTCCAGCAACAAAACAATCTGCGTGAAGTTCCCAATGCCAATGCCCAAAGTGTAAATTCTGCTTACGTTGGTAGGGAACAGTTTCCTCCTAATTCTATCAAGTACTCCTCTGATGTCCAGCCTCTACTGCAGTCATCTGGGTTCACACCTCCACTATATGCCTCGGCAGCAGCCTACATGACCTCAGCAAATCCATTTTACACTAACTTGCAGGCCTCGGGTATATACAGTCCGCAATATGTTGGTGGATACAGTTTAAATCCTACAGTTGTTCCTTCATACATCACTGCATACCCTCATGGGGCTATACCATTTGTTTTTGATGGGGCTTCTAGTTCCAATTATGCTCCATTAACACCAGGACTTTCTACTGGGGGAAACATTTCACATGGTACTGAAATGACGCATGTAAACAAGTTTCCTGGGCAATATGGATTTCCTCTGCAGCCGTCTTTTGGTGATCCTATGTACATGCAATACCATCAGCAACCTTTTGTCGAAGGATATGGTGTTTCTGGTCATTATGATCCGATGGCACCTAGAGCAAGTGGTGTTAACCAAATTAGTCCTTTTGATTCACAAAAAAGGCCCACTGGTGGTGATTATTTGGATGATAAAAAATTACATGATCAAAGAACTGGTGCTAATATGAACTCAAGAAGAGGTGGATTGTTGATCCCTAATTATTATGGACACCCAACAAATATGGGTTTTGTAATGCAGTATCCAAGTTCACCGCTTCCTAGTCCAGTTTTGTCAGGATACCCAGAAGGAAGTCCTGGCCTTCCAGGAGTAAGGAATGAGATGAAACTTTCTCCAGCTTCTGGTAGAAATGGAGGCATATTACCTGGATGGCAGGGTCAGAGGTCCTTTGACAGTGCTCATGACCCGAAAATTGTTAATTTTCTTGAAGAGTTGAAATCTGGCAAAGGTCGAAGATTTGAGCTATCTGATATTATTGGACATATTGTTGAATTTAGTGCTGATCAGCATGGGAGTAGATTTATACAGCAGAAGTTGGAAAGTTGTAGTGTTGAAGAAAAGGCAATGGTGTTCAAAGAAGTTCTTCCACATGCTTCCAAATTAATGACCGACGTATTTGGTAACTATGTCATACAGAAGTTTTTTGAGTACGGAAGCCCTGAGCAAAGGAAGGAACTTGCTAATCGACTGGCTGGTCAGATATTGCCTTTAAGTCTGCAGATGTATGGCTGCCGTGTAATCCAAAAGGCACTTGAGGTTATTGACCATGAACAGAAAGCTCAGCTCGTTCGTGAGCTAGATGGAAATGTTATGAGATGTGTACGTGACCAAAATGGGAATCATGTAATACAGAAATGCATTGAATCTATTCCACCCAAAAATATTGGCTTTATAATATCTGCATTTCGTGGTCAAGTTGCTGTTCTGTCAATGCATCCTTATGGCTGCCGAGTCATACAGAGAGTTCTAGAGCATTGTACGGATGAGATGCAATGCCAGTTTATTGTTGATGAAATCTTGGAGTCAGTTTACGCCCTCGCTCAGGACCAGTATGGTAATTATGTAACCCAGCATGTATTAGAGAGAGGAAAGCCTCAGGAAAGGAGCCAAATTATTAGCAAACTATCAGGACATGTTGTTCAATTAAGCCAGCATAAGTTTGCTTCAAATGTTGTTGAGAAATGTCTAGCATATGGCGATGCCACCGAACGGGAATTGTTAATTGCAGAGATTGTTGGGCATGATGGACAAAATGATAATTTATTGACCATGATGAAGGACCAATTTGCAAATTATGTGGTCCAAAAGGTTATTGATATCTGTTCTGAAAATCAGCGAGCAATGTTGCTTTCTCACGTAAGACTTCATGCCCATGCTTTGAAGAAATACACTTATGGAAAACACATTGTGGCCCGCTTGGAACAACAATTCGGAGAGGATCAAACACCCAAATCAGGATGA 2892 0.4243 MATESPIRISEAGVKWPSLKEAATLGSPARNMATEDLGILLKGHRFHGSGKDVAVAPNRSGSAPPSMEGSFLAIENLLSQQNTTQNTSLETLNRAMQKCESEEQLRADPAYLAYYSSHVNLNPRLPPPLISRENRHQIGGLRNKWGFSSADHSSKSSSHMSQGTLATHREESEDDSPSGPDAAASLPSQNKNVVDLIQEDFPRTMSPVYNKSHSASHGLVNEPIDLDAGSSSSYDSPATASEVAKPTVGADDIRVSSTVGIHAALASSSSLGSTGSVGFNDLDVSTVESQLKALSVSNLPNSESLSYQNNLIQHQIFQQQNNLREVPNANAQSVNSAYVGREQFPPNSIKYSSDVQPLLQSSGFTPPLYASAAAYMTSANPFYTNLQASGIYSPQYVGGYSLNPTVVPSYITAYPHGAIPFVFDGASSSNYAPLTPGLSTGGNISHGTEMTHVNKFPGQYGFPLQPSFGDPMYMQYHQQPFVEGYGVSGHYDPMAPRASGVNQISPFDSQKRPTGGDYLDDKKLHDQRTGANMNSRRGGLLIPNYYGHPTNMGFVMQYPSSPLPSPVLSGYPEGSPGLPGVRNEMKLSPASGRNGGILPGWQGQRSFDSAHDPKIVNFLEELKSGKGRRFELSDIIGHIVEFSADQHGSRFIQQKLESCSVEEKAMVFKEVLPHASKLMTDVFGNYVIQKFFEYGSPEQRKELANRLAGQILPLSLQMYGCRVIQKALEVIDHEQKAQLVRELDGNVMRCVRDQNGNHVIQKCIESIPPKNIGFIISAFRGQVAVLSMHPYGCRVIQRVLEHCTDEMQCQFIVDEILESVYALAQDQYGNYVTQHVLERGKPQERSQIISKLSGHVVQLSQHKFASNVVEKCLAYGDATERELLIAEIVGHDGQNDNLLTMMKDQFANYVVQKVIDICSENQRAMLLSHVRLHAHALKKYTYGKHIVARLEQQFGEDQTPKSG* 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g1304 963 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 614 954 IPR033133 GO:0003723
Aev04g1304 963 MobiDBLite consensus disorder prediction 226 240 - -
Aev04g1304 963 ProSiteProfiles Pumilio RNA-binding repeat profile. 634 669 IPR001313 GO:0003723
Aev04g1304 963 ProSiteProfiles Pumilio RNA-binding repeat profile. 670 705 IPR001313 GO:0003723
Aev04g1304 963 CDD Pumilio 629 950 IPR033712 GO:0003723
Aev04g1304 963 MobiDBLite consensus disorder prediction 147 165 - -
Aev04g1304 963 SMART pum_5 851 886 IPR001313 GO:0003723
Aev04g1304 963 SMART pum_5 893 928 IPR001313 GO:0003723
Aev04g1304 963 SMART pum_5 634 669 IPR001313 GO:0003723
Aev04g1304 963 SMART pum_5 815 850 IPR001313 GO:0003723
Aev04g1304 963 SMART pum_5 742 777 IPR001313 GO:0003723
Aev04g1304 963 SMART pum_5 670 705 IPR001313 GO:0003723
Aev04g1304 963 SMART pum_5 706 741 IPR001313 GO:0003723
Aev04g1304 963 SMART pum_5 778 814 IPR001313 GO:0003723
Aev04g1304 963 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 46 956 - -
Aev04g1304 963 ProSiteProfiles Pumilio RNA-binding repeat profile. 815 850 IPR001313 GO:0003723
Aev04g1304 963 ProSiteProfiles Pumilio RNA-binding repeat profile. 742 777 IPR001313 GO:0003723
Aev04g1304 963 ProSiteProfiles Pumilio RNA-binding repeat profile. 887 928 IPR001313 GO:0003723
Aev04g1304 963 ProSiteProfiles Pumilio RNA-binding repeat profile. 851 886 IPR001313 GO:0003723
Aev04g1304 963 PANTHER PUMILIO HOMOLOG 5 46 956 - -
Aev04g1304 963 ProSiteProfiles Pumilio RNA-binding repeat profile. 706 741 IPR001313 GO:0003723
Aev04g1304 963 MobiDBLite consensus disorder prediction 142 190 - -
Aev04g1304 963 SUPERFAMILY ARM repeat 619 951 IPR016024 -
Aev04g1304 963 Gene3D - 615 959 IPR011989 -
Aev04g1304 963 ProSiteProfiles Pumilio RNA-binding repeat profile. 778 814 IPR001313 GO:0003723
Aev04g1304 963 MobiDBLite consensus disorder prediction 501 523 - -
Aev04g1304 963 Pfam Pumilio-family RNA binding repeat 782 817 IPR001313 GO:0003723
Aev04g1304 963 Pfam Pumilio-family RNA binding repeat 820 852 IPR001313 GO:0003723
Aev04g1304 963 Pfam Pumilio-family RNA binding repeat 897 929 IPR001313 GO:0003723
Aev04g1304 963 Pfam Pumilio-family RNA binding repeat 753 776 IPR001313 GO:0003723
Aev04g1304 963 Pfam Pumilio-family RNA binding repeat 855 888 IPR001313 GO:0003723
Aev04g1304 963 Pfam Pumilio-family RNA binding repeat 675 705 IPR001313 GO:0003723
Aev04g1304 963 Pfam Pumilio-family RNA binding repeat 710 743 IPR001313 GO:0003723
Aev04g1304 963 Pfam Pumilio-family RNA binding repeat 638 672 IPR001313 GO:0003723
Aev04g1304 963 MobiDBLite consensus disorder prediction 205 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g1304 Aev-Chr4 8655029 8666776 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g1304 K17943 - gmx:100780168 1530.38