Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g1245 ATGGCACCAACAATGGCAAGACCAACAATTCTAGTTTGGTCCTTGTTTCTTGGGGTGGCTTGTTTCAATGTAGTTGGTGCTTTTGGAGGGAAGAACAATATGCATCATCATGATGCAGTAAGAAAATTACAAGCATTTAAATCCTCTTTAACTAGACATGACTCAATTCCTTCTACACCATCATCTTCCCTTCAGGTTGGGAATAGTCCACGTGTGTACCGTGTGACATCTTATGGTGCAGATCCAACTGGGAATTCAGATAGTACTAATGCACTCCTTGCAGCAATAGCAGATGCAGCAAAGGGTCCAAGTGTAGGTCAATTGATACAGGGGATCAATGATCTTGGAGGAGCAGAGATTGATCTTGAGGGCGGAACCTATGTGATCAGCCAGCCGCTGCGGTTTCCGGCCGCCGGAGTCGGGAACATTATGATACATGGTGGAAGCATAAGAGCCGGAAATACTTTTAATGGAAATAGCTACCTCATTGATTTGTCTTCTAATAGTGGTGGTGGACAAAACACATACAATTATGAGTACATAACCTTCAAGGACCTATTATTGGACTCAAGCTATAGAGGAGGTGGAATTCAAGTCATAAACTCACTCAGAACAAACATAGACAATTGTTACATCACACATTTCACACTCAGTGCAATCTTTGTCCAAGGTGGTCATGAAACCTACATAAGGAACTCCTTCATCGGCCAGCACATCACCGCCGGCGGGGATCCAGGCGAAAGGAGCTTCGGTGGCACCGGGATAACACTCCAAGGCAACGATAACGCCGTCACGGATGTTGTAATATTCTCTGCGAGTATAGGAATATTGGTTGCCGGTCAGGCTAACACATTTTCCGGTGTGCATTGTTACAATAAGGCCACCGGTTTCGGCGGCACCGGGATTTATATTCAGCTACCGGGCAATACACAAACAAGGATTGTGAATTCTTACATGGATTACACTAGCATTGTAGCAGAGGACCCTGTTCAGCTTCATATCTCTAGCACTTTCTTCCTAGGTGATGGTAACATTATCCTTAAATCAATTAAGGGTATTGTGAATGGAATTAGTATTGTTGATAATATGTTCTCAGGATCAAATTCTGGTGTTGAGATTGTTCAATTGGATCAATCAAGTGCTCCTTTCAACCAAATTGATCAAGTTTATGTTGATAGGAACATTGTGAGAGGGATGAATTTGAAGTCAACGGTAGCAAAAATGTCAACGCAAGGGAATGGAACATCATGGACAGTTGATTTTAGCAACGTTTTGCTTTTTCCCAACCTTATTAAGAATGTTCAGTACTCGTTGAGCCCTAATGGTAATGGGGGCACTTTCCCAAATCATGCTTTGACAAGTGTGGCTAATAATAAGGTTGTGGTTGTAACAAGTGAAGCAGTGAATGCAAATGTTTTTGTCACTGTGGATCAAGCTAGTAATTGA 1446 0.4246 MAPTMARPTILVWSLFLGVACFNVVGAFGGKNNMHHHDAVRKLQAFKSSLTRHDSIPSTPSSSLQVGNSPRVYRVTSYGADPTGNSDSTNALLAAIADAAKGPSVGQLIQGINDLGGAEIDLEGGTYVISQPLRFPAAGVGNIMIHGGSIRAGNTFNGNSYLIDLSSNSGGGQNTYNYEYITFKDLLLDSSYRGGGIQVINSLRTNIDNCYITHFTLSAIFVQGGHETYIRNSFIGQHITAGGDPGERSFGGTGITLQGNDNAVTDVVIFSASIGILVAGQANTFSGVHCYNKATGFGGTGIYIQLPGNTQTRIVNSYMDYTSIVAEDPVQLHISSTFFLGDGNIILKSIKGIVNGISIVDNMFSGSNSGVEIVQLDQSSAPFNQIDQVYVDRNIVRGMNLKSTVAKMSTQGNGTSWTVDFSNVLLFPNLIKNVQYSLSPNGNGGTFPNHALTSVANNKVVVVTSEAVNANVFVTVDQASN* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g1245 481 PANTHER POLYGALACTURONASE QRT3 12 479 IPR039279 GO:0004650
Aev04g1245 481 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Aev04g1245 481 PANTHER POLYGALACTURONASE QRT3-LIKE PROTEIN 12 479 - -
Aev04g1245 481 SUPERFAMILY Pectin lyase-like 71 449 IPR011050 -
Aev04g1245 481 SMART pbh1 202 224 IPR006626 -
Aev04g1245 481 SMART pbh1 259 280 IPR006626 -
Aev04g1245 481 SMART pbh1 354 375 IPR006626 -
Aev04g1245 481 Gene3D - 73 480 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g1245 Aev-Chr4 8064481 8067087 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g1245 - - gmx:100804107 687.567