Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g1166 ATGAGAAAGAGCCGCCTGAGCCTCCATGGTCACCGCGGCTGTCTTGGTGCTGTGAGGAAAGAGGAAGGAGAGCGATGGCGAGATCGAGGTCGAGGTAGAGGGAAAGAGGAACCGCAGAGCTGGATTTTGGCGCGAGGAGCTACTGGTGATGGACGTGATGTTGCTGCTGCTTGCTTGATTTTGTTGCTGCCAATTGCTGCAGCAGCTTGGATTTTGTTGCTGTCGTGGTGGCTCCGTTCTCCGATGGCAGCGTCGGTCGATGGTGTTGATGATGAAGAAGATGAGGTCGTGTCGGAATTGGAGGACTGCGGGAGAACTAGATCATCACTTGAAGAAAGGCTTATGCAGTTCGAGAGTGATTTGAAGGCTGTGGAAGAAACAAGATGCGTCCACGAAACCGAGCTCAATCAAACTAAAAGAATAAACAGGAAGAATCAACAGACCATACAGTTGCTAGAGCAGGAAAAAGCTGAGTTCCAGAAAAAAGCACAAGCCTTTGAAGAAGAATTGAAACAGATTAAGGAACAAAAGCGGAATCAAGCTTCAAAGTTAAACAGGAAAAATTTGCCTGTTCAAGAAGATATGAAGGCCTCAAAAGGTGATACTCTTTTTCCTCATCTAGGATTAGGAGACCACAGGGTACTCCACAGGGTTCTTCAACACTGCAGAGTTTCAAGGGATTCCAAAACTGCAGCTAAAACCCATGCAAAGGTTGTTGTTCTTGGGTATGCAACATACCCATCTCTTGTATCTTCTCTGATTTCAACCTATGCATACTGTCACCAACCCCGGATTACCAATCATGTTGTTGATCACGTTTTCTCCCATGTTTTGGACCTATTCACCATGAATTTGATAGTTGAGAGCTTAATGAAATCTGGGCAGTGTGATGTTGCCAAGAAGGTGTTTGTCAAAATGCATGTTCGGGATGTTGTCTCATGGAACACCATGATTGGAGGGTATGTGAAGAACTCACGATTCGTTGATGCATTGAGGATTTTCAGGGGGATGCTGAGTGCCAAAGTTGAGCCTGATGGGTTCACCTTTGCCTCTGTGGTTACTGGGTGCGCACGCCTTGGGGCTCTTGGCAATGCCAAGTGGGTGCATTCTTTGATGGTTGAGAAAAGGATTGAGCTGAATTACATACTGAGCGCTGCGTTGATTGACATGTATAGTAAGTGTGGTAGAATTGATATTTCGAAGCAGGTTTTTGACGGTGCAGCACGCGATCATGTGTCTGTTTGGAATGCTATGATTAATGGGTTGGCAATTCACGGGCTTGCTTTGGATGCAACTGCAGTTTTTTCCAGGATGGAGTTGGAAAACATGTTTCCTGATTGTGTTACTTTTATTGGGGTTCTGACAGCTTGTAGCCACTGTGGATTGGTTGAAGAAGGTCGCAAGTACTTTGATATGATGCAGAATCGATTCTTCATTAAGCCACAACTCGAGCATTATGGAACCATGGTTGATCTTTTGGGACGATCGGGGCTCTTGGACGAGGCCTATGATATGATTAAGGCGATGCCAATGGAGCCTGATGTTGTTATCTGGAGAGCACTTCTGAGTGCTTGTAGAACCCACAGAAACAAAGAACTTGGTGAAGTTGCGATTGCAAATATATCGCGTCTTGAGAGTGGGGATTTTGTTTTGCTGTCAAACATGTATTGTTCGTTAAAGAACTGGGACAGTGCTGAGAGAGTGAGACAGATGATGAAAAAGGGAGGAGTACATAAAAAACGAGGTAAGAGTTGGATCGAATTGGGGGAAAGCATTCATCAATTCAAGGCAGATGATCAGTCACATCCTGAAATGGAAGCAATTTATAGAGTGCTGGAAGGTTTGAACCAAAGAGCTAAGTTGGAAGGCTTTACTCCTTTGACAGATCTGGTTTTGATGGATGTTTCAGAAGAGGAAAAAGAGGAAAACTTAAATTACCATAGTGAGAAGTTGGCCTTAGCCTACGGGGTACTGAAAAGTAGCCCTGGAATGAGAATCAGGATTTACAAGAACTTGCGTATCTGTCAAGACTGTCATAACTGGATTAAAATTGTGTCCAGAATATTAAGCAGAGAGATAATTGTTAGGGATCGTCTCCGTTTTCATCAATTTGAAGGTGGTTCTTGTTCTTGCGGAGACTATTGGTAG 2148 0.4437 MRKSRLSLHGHRGCLGAVRKEEGERWRDRGRGRGKEEPQSWILARGATGDGRDVAAACLILLLPIAAAAWILLLSWWLRSPMAASVDGVDDEEDEVVSELEDCGRTRSSLEERLMQFESDLKAVEETRCVHETELNQTKRINRKNQQTIQLLEQEKAEFQKKAQAFEEELKQIKEQKRNQASKLNRKNLPVQEDMKASKGDTLFPHLGLGDHRVLHRVLQHCRVSRDSKTAAKTHAKVVVLGYATYPSLVSSLISTYAYCHQPRITNHVVDHVFSHVLDLFTMNLIVESLMKSGQCDVAKKVFVKMHVRDVVSWNTMIGGYVKNSRFVDALRIFRGMLSAKVEPDGFTFASVVTGCARLGALGNAKWVHSLMVEKRIELNYILSAALIDMYSKCGRIDISKQVFDGAARDHVSVWNAMINGLAIHGLALDATAVFSRMELENMFPDCVTFIGVLTACSHCGLVEEGRKYFDMMQNRFFIKPQLEHYGTMVDLLGRSGLLDEAYDMIKAMPMEPDVVIWRALLSACRTHRNKELGEVAIANISRLESGDFVLLSNMYCSLKNWDSAERVRQMMKKGGVHKKRGKSWIELGESIHQFKADDQSHPEMEAIYRVLEGLNQRAKLEGFTPLTDLVLMDVSEEEKEENLNYHSEKLALAYGVLKSSPGMRIRIYKNLRICQDCHNWIKIVSRILSREIIVRDRLRFHQFEGGSCSCGDYW* 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g1166 715 Pfam E motif 528 587 IPR046848 -
Aev04g1166 715 Coils Coil 107 127 - -
Aev04g1166 715 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 411 445 IPR002885 -
Aev04g1166 715 Coils Coil 135 187 - -
Aev04g1166 715 Gene3D Tetratricopeptide repeat domain 211 368 IPR011990 GO:0005515
Aev04g1166 715 Pfam DYW family of nucleic acid deaminases 623 715 IPR032867 GO:0008270
Aev04g1166 715 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 184 697 - -
Aev04g1166 715 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 184 697 - -
Aev04g1166 715 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 345 379 IPR002885 -
Aev04g1166 715 Pfam PPR repeat family 309 358 IPR002885 -
Aev04g1166 715 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 310 344 IPR002885 -
Aev04g1166 715 TIGRFAM PPR: pentatricopeptide repeat domain 312 345 IPR002885 -
Aev04g1166 715 TIGRFAM PPR: pentatricopeptide repeat domain 414 447 IPR002885 -
Aev04g1166 715 Pfam PPR repeat 448 475 IPR002885 -
Aev04g1166 715 Pfam PPR repeat 414 441 IPR002885 -
Aev04g1166 715 Pfam PPR repeat 485 510 IPR002885 -
Aev04g1166 715 Gene3D Tetratricopeptide repeat domain 385 606 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g1166 Aev-Chr4 7436652 7441448 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g1166 263 715 Glycoside Hydrolase AT3G49170 38.745 4.20e-109 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g1166 - - lang:109344997 863.988