Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g1032 ATGGCTGCGTCTCTGGCTCAGCAGCTGAGCGGGCTGAGGTGGACCCCGCTCCCGGCCTCAACTTCGTCGTCACCGTCGAGGCTAACCCATCAGAAGCACCGCACTCGCACGGTGGTGTGTTCAGTGGCACTCTCCAATGCTCAGAACAGAGAGCGAATCAAGCTCAAGGAGCTCTTCCAAGAAGCCTATGAGCGGTGCCGCACTGCCCCCATGGAAGGCGTTTCCTTCACTATCGAACAGTTCACTGATGCTTTGGAGAAGTATGACTTCGATTCGGAGGTTGGCACCAAGGTTAAGGGCACTGTATTTAGCACAGATGCCGGTGGAGCTTATGTTGACGTTACTGCAAAGTCCACGGCATTTTTGCCGCTGCAAGAGACATGCATCCACAAAATTAAGCACATAGAAGAAGCAGGCATATTTCCTGGCTTGAGAGAGGAATTTGTAATCATTGGTGAAAATGAAGCTGATGATAGCTTGGTCTTGAGTTTGAAGGCTGTCCAGTTTGATCTTGCATGGGAGCGCTGCAGACAACTCCAAGCAGAAGATGTTGTGGTCAAGGGAAAGATTGTTAATGGAAACAAAGGTGGACTAGTGGCTGAGGTGGAAGGCTTAAAGGGTTTTGTTCCATTCTCACAAATATCAACGAAATTGACTGGAGAAGAGCTTCTTGAGAAGGAGCTTCCCCTAAAGTTTGTGGAGGTGGATGAGGAACAGTCAAGACTTATACTGAGTCACCGGAAAGCTGTGGCCGACAGCCAGGGACAGCTGGGAATTGGATCAGTAGTGATTGGCATTGTTCAAAGCCTAAAACCATATGGTGCCTTCGTTGACATTGGTGGGATCAGTGGTCTCCTCCATGTCAGTCAGATCAGTCATGACCGTATAACTGATATCGCAACTGTTCTTCAACCGGGTGATACTCTGAAGGTGATGATCTTAAGTCATGACCGGGAAAGAGGCCGAGTAAGTCTTTCCACGAAGAAGCTGGAACCCACACCGGGAGATATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGGCGGAGGAGATGGCGCAGACATTCAGACAGAGAATAGCGCAAGCGGAAGCCATGGCTCGTGCTGATATGCTTAGGTTCCAGCCAGAGAGTGGATTAACTCTGAACAGTGATGGGATATTGGGACCACTTGGTTCAGACTTGCCTGCAGAGGGACTTGATTTGAGTGCGGTGCCCACTGCTGAAGAAGATTCATGA 1236 0.496 MAASLAQQLSGLRWTPLPASTSSSPSRLTHQKHRTRTVVCSVALSNAQNRERIKLKELFQEAYERCRTAPMEGVSFTIEQFTDALEKYDFDSEVGTKVKGTVFSTDAGGAYVDVTAKSTAFLPLQETCIHKIKHIEEAGIFPGLREEFVIIGENEADDSLVLSLKAVQFDLAWERCRQLQAEDVVVKGKIVNGNKGGLVAEVEGLKGFVPFSQISTKLTGEELLEKELPLKFVEVDEEQSRLILSHRKAVADSQGQLGIGSVVIGIVQSLKPYGAFVDIGGISGLLHVSQISHDRITDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLNSDGILGPLGSDLPAEGLDLSAVPTAEEDS* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g1032 411 SUPERFAMILY Nucleic acid-binding proteins 83 190 IPR012340 -
Aev04g1032 411 SMART S1_6 258 328 IPR022967 -
Aev04g1032 411 SMART S1_6 181 247 IPR022967 -
Aev04g1032 411 SMART S1_6 93 165 IPR022967 -
Aev04g1032 411 ProSiteProfiles S1 domain profile. 183 247 IPR003029 GO:0003676
Aev04g1032 411 PANTHER 30S RIBOSOMAL PROTEIN S1, CHLOROPLASTIC 3 409 - -
Aev04g1032 411 CDD S1_RPS1_repeat_hs4 260 328 - -
Aev04g1032 411 Gene3D - 77 176 IPR012340 -
Aev04g1032 411 Coils Coil 345 365 - -
Aev04g1032 411 PRINTS Ribosomal protein S1 signature 95 113 IPR035104 -
Aev04g1032 411 PRINTS Ribosomal protein S1 signature 186 202 IPR035104 -
Aev04g1032 411 PRINTS Ribosomal protein S1 signature 113 127 IPR035104 -
Aev04g1032 411 PRINTS Ribosomal protein S1 signature 231 251 IPR035104 -
Aev04g1032 411 PANTHER 30S RIBOSOMAL PROTEIN S1 3 409 - -
Aev04g1032 411 Gene3D - 257 336 IPR012340 -
Aev04g1032 411 SUPERFAMILY Nucleic acid-binding proteins 259 338 IPR012340 -
Aev04g1032 411 SUPERFAMILY Nucleic acid-binding proteins 182 250 IPR012340 -
Aev04g1032 411 CDD S1_RPS1_repeat_ec2_hs2 183 247 - -
Aev04g1032 411 Pfam S1 RNA binding domain 181 247 IPR003029 GO:0003676
Aev04g1032 411 Pfam S1 RNA binding domain 93 165 IPR003029 GO:0003676
Aev04g1032 411 Pfam S1 RNA binding domain 259 328 IPR003029 GO:0003676
Aev04g1032 411 ProSiteProfiles S1 domain profile. 260 328 IPR003029 GO:0003676
Aev04g1032 411 Gene3D - 177 256 IPR012340 -
Aev04g1032 411 ProSiteProfiles S1 domain profile. 95 165 IPR003029 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g1032 Aev-Chr4 6386432 6389325 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g1032 K02945 - nnu:104607070 629.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev04g1032 04 6386432 6389325 Aev04g1032 04 6386432 6389325 ECH
Aev01g2837 01 30714197 30716845 Aev04g1032 04 6386432 6389325 PCT