Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g3083 ATGTCTTCTCCAAGCAAACGCCGAGACATGGATTTGATGAAACTGATGATGAGTGATTACAAGGTGGAAATGATCAACGATGGCATGCAAGAGTTCTTTGTGGAATTCCACGGACCAAAAGACAGTCCTTATCAAGATGGAGTATGGAAGGTAAGGGTGGAGCTACCCGATGCTTATCCTTATAAGTCGCCTTCCATTGGTTTTGTCAACAAAATTTACCACCCTAATGTTGATGAACTGTCTGGGTCAGTATGCTTGGATGTTATTAACCAGACCTGGAGTCCTATGTTTGACCTTGTTAATGTGTTTGAAGTGTTTCTTCCTCAACTTCTTCTGTACCCCAACGCATCAGATCCATTGAATGGTGATGCTGCTGCCTTGATGATGCGAGACCATACCGCTTATGAACAAAAAGTCAAAGAGTATTGTGAAAAATATGCCAAGCCAGAAGATATTGGAGCTGCTCTGGAGGAAAATTCCAGTGAAGAAGATGAGTTAAGTGAAGAAGATTATGCCTCTAGTGACGACAACATCGCCGGCGAACCTGATCCATAG 555 0.4288 MSSPSKRRDMDLMKLMMSDYKVEMINDGMQEFFVEFHGPKDSPYQDGVWKVRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNASDPLNGDAAALMMRDHTAYEQKVKEYCEKYAKPEDIGAALEENSSEEDELSEEDYASSDDNIAGEPDP* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g3083 184 PANTHER UBIQUITIN-CONJUGATING ENZYME E2-21 KDA 1 3 184 - -
Aev03g3083 184 SUPERFAMILY UBC-like 4 148 IPR016135 -
Aev03g3083 184 MobiDBLite consensus disorder prediction 156 184 - -
Aev03g3083 184 Gene3D Ubiquitin Conjugating Enzyme 1 161 IPR016135 -
Aev03g3083 184 CDD UBCc 10 143 IPR000608 -
Aev03g3083 184 SMART ubc_7 4 148 - -
Aev03g3083 184 Pfam Ubiquitin-conjugating enzyme 11 142 IPR000608 -
Aev03g3083 184 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 148 IPR000608 -
Aev03g3083 184 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 184 - -
Aev03g3083 184 MobiDBLite consensus disorder prediction 153 184 - -
Aev03g3083 184 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g3083 Aev-Chr3 29576961 29579352 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g3083 3 117 Miscellaneous Gene Families AT3G17000 22.764 6.82e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g3083 K10576 - gmx:100791133 335.109
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev03g3083 03 29576961 29579352 Aev03g3083 03 29576961 29579352 ECH
Aev03g3083 03 29576961 29579352 Aev09g0189 09 1582239 1584366 ECH
Aev03g3083 03 29576961 29579352 Aev06g3241 06 33826059 33827488 ECH