LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aev03g1664	ATGGCTAATACTCATGGAAATGGGTTTTACGTGGTGGTGTTAATTGTTAGCACCATGGTTGCAGCAACATGTGCTGGTAATTTCTATCAGGACTTTGATATAACATGGGGCGATAATCGTGCTAAGATATTAAATGGAGGACAGCTTCTGTCTCTGTCGCTGGACAAAGTCTCAGGCTCTGGCTTCCAATCAAAGAAAGAGTACCTGTTTGGGAGGATTGATATGCAGCTCAAGCTTGTTTCTGGCAACTCTGCTGGCACTGTCACTGCTTACTACTTGTCATCAGAAGGGGCAACACATGATGAAATAGATTTTGAGTTCTTAGGGAATGTGAGTGGTGATCCTTACATTGTGCACACAAATGTGTTTAGCCAAGGCAAAGGCAACCGAGAGCAACAGTTCTACCTCTGGTTCGACCCCACCAGAAACTTCCACACTTACTCCATCATTTGGAAGCCACAACACATCATATTCTTGGTTGATAACATTCCCATAAGGGTATTCAAGAACACAGAATCTCTGGGTGTCCCTTTCCCAAAGAACCAACCCATGAGAATCTATTCCAGCCTCTGGAATGCTGATGACTGGGCCACAAGAGGTGGATTGGTCAAAACCGATTGGTCTAAAGCACCCTTCACTGCATACTATCGCAACTTCAAAGCCACAGAGTTCTCCTCTGTTTCCTCTTCCAATTCATTCTCTGATTCTGCAGCACAGAGCAATAACAACAACAATAATGAACTTGATGCTTATGGCAGAAGAAGATTGAGATGGGTTCAGAAGTACTTCATGATCTATAACTACTGTAACGATCTTAAGCGGTTCCCACAAGGCATTCCTGCTGAGTGTAAGCACTGA	858	0.4382	MANTHGNGFYVVVLIVSTMVAATCAGNFYQDFDITWGDNRAKILNGGQLLSLSLDKVSGSGFQSKKEYLFGRIDMQLKLVSGNSAGTVTAYYLSSEGATHDEIDFEFLGNVSGDPYIVHTNVFSQGKGNREQQFYLWFDPTRNFHTYSIIWKPQHIIFLVDNIPIRVFKNTESLGVPFPKNQPMRIYSSLWNADDWATRGGLVKTDWSKAPFTAYYRNFKATEFSSVSSSNSFSDSAAQSNNNNNNELDAYGRRRLRWVQKYFMIYNYCNDLKRFPQGIPAECKH*	286

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aev03g1664	285	Pfam	Xyloglucan endo-transglycosylase (XET) C-terminus	242	283	IPR010713	GO:0005618\|GO:0006073\|GO:0016762\|GO:0048046
	Aev03g1664	285	PRINTS	Glycosyl hydrolase family 16 signature	118	131	IPR008264	GO:0004553\|GO:0005975
	Aev03g1664	285	PRINTS	Glycosyl hydrolase family 16 signature	136	153	IPR008264	GO:0004553\|GO:0005975
	Aev03g1664	285	PRINTS	Glycosyl hydrolase family 16 signature	60	78	IPR008264	GO:0004553\|GO:0005975
	Aev03g1664	285	CDD	GH16_XET	25	283	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Aev03g1664	285	Gene3D	-	13	285	-	-
	Aev03g1664	285	ProSiteProfiles	Glycosyl hydrolases family 16 (GH16) domain profile.	22	216	IPR000757	GO:0004553\|GO:0005975
	Aev03g1664	285	PIRSF	EndGlu_transf	3	285	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Aev03g1664	285	Pfam	Glycosyl hydrolases family 16	29	209	IPR000757	GO:0004553\|GO:0005975
	Aev03g1664	285	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED	10	285	IPR044791	GO:0004553
	Aev03g1664	285	ProSitePatterns	Glycosyl hydrolases family 16 active sites.	102	112	IPR008263	GO:0004553\|GO:0005975
	Aev03g1664	285	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 15	10	285	-	-
	Aev03g1664	285	SUPERFAMILY	Concanavalin A-like lectins/glucanases	28	284	IPR013320	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aev03g1664	Aev-Chr3	18512051	18515685	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aev03g1664	11	284	Glycoside Hydrolase	AT3G23730	74.194	2.66e-162	451

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aev03g1664	K08235		-	gmx:100811671	487.263

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aev03g1664	03	18512051	18515685	Aev03g1664	03	18512051	18515685	ECH