Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g1654 ATGATATCTGGGTATGCCCGTAACGGCTTAAAAAAAGAGGCTTTGCAGCTTTTTCGTCAAGTTCCTGATAGGGACTTGTTTGCTTGGACTGCTTTGATTTCTGGGTTTGTTCAGAGCGGGAACTGTGTTGATGCCTTGAACCTGTTTGTTAAAATGCTCCGTGAAGATGTTGACATTGTTGATCCTTTGGTTCTGTCTAGTGTTGTTGGTGCCTGTGCTAATTTGGCTCTTTGGGAGCTTGGGAAGCAGGTGCATTGTTTGGTGATTGGTCTCGGGTTCGAGTCCTGTGTATTCGTGAGTAATGCGCTTGTTGACATGTATGCTAAGTGTAGTGACCTAGTGGCTGCGAAGGGTGTTTTTGGTGAGATGGGTAGGAAGGATGTCGTTTCTTGGACATCCATGATTGTTGGAACTGCACAGCACGGGAGGGCGGAGGAGGCGTTGGCTTTGTATGATAGGATGGTTTTGGCCGGCGTTAGGCCGAATGAGGTGACCTTTGTTGGGTTGATTTATGCATGTAGTCATGTTGGTTTGGTTGACAAGGGACGAGAGTTATTCCGGTCAATGGTGAAGGATCATGGGATTAAGCCTTCGTTGCAGCATTATACTTGTTTGCTGGATCTTTTGAGCAGATCAGGGTACCTGGAAGAGGCTGAGGAAATCATTAGAACTATGCCGGTTAAACCCGATGAGCCTATGTGGGCTGCTTTGCTAAGTGCTTGTAAGCAACATGGTAAGACCAAGATGGCAATTAGGATTGCTGACCATTTGTTGGGTTTGAAGCAGTTAGGTCCTTCCTCATATATATTGTTATCTAATGTTTATGCTGCAGCTGGTTTGTGGGAAAATGTTTCAAAGGTGAGGAAGTTGGTGATGGTCATGGAAGTTAAGAGGGAACCAGGCTATAGCTGCATTGAGTTGGGAAAGGAGAGCTGTATATTTTACGCCGGAGAGACGTCTCATCCAATGAAGGATGAGATTGCGGCTTTGATGAGGAAGTTGGATTCTGAGATGAGGAAAAGGGGTTATGTTCCTGATACTAGCTCAGTTTTGCATGATATGGATCAGCAGGAGAAGGAAAGACAACTTTTCTGGCACAGTGAGAGGTTAGCTGTGGCTTATGGGCTCCTTAAGGCGCGTCCGGGTACTATTATACGTGTCGTGAAAAATCTTCGTGTTTGTGGAGATTGCCATACTGTTCTGAAGCTCATCAGCACCATAGCAGGAAGGGAAATTTATGTGAGAGATGCTACGAGATATCACCATTTTAAAGATGGGAAATGTTCCTGCAATGACTTCTGGTGA 1305 0.4536 MISGYARNGLKKEALQLFRQVPDRDLFAWTALISGFVQSGNCVDALNLFVKMLREDVDIVDPLVLSSVVGACANLALWELGKQVHCLVIGLGFESCVFVSNALVDMYAKCSDLVAAKGVFGEMGRKDVVSWTSMIVGTAQHGRAEEALALYDRMVLAGVRPNEVTFVGLIYACSHVGLVDKGRELFRSMVKDHGIKPSLQHYTCLLDLLSRSGYLEEAEEIIRTMPVKPDEPMWAALLSACKQHGKTKMAIRIADHLLGLKQLGPSSYILLSNVYAAAGLWENVSKVRKLVMVMEVKREPGYSCIELGKESCIFYAGETSHPMKDEIAALMRKLDSEMRKRGYVPDTSSVLHDMDQQEKERQLFWHSERLAVAYGLLKARPGTIIRVVKNLRVCGDCHTVLKLISTIAGREIYVRDATRYHHFKDGKCSCNDFW* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g1654 434 Gene3D Tetratricopeptide repeat domain 145 313 IPR011990 GO:0005515
Aev03g1654 434 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 198 232 IPR002885 -
Aev03g1654 434 Pfam E motif 252 306 IPR046848 -
Aev03g1654 434 Pfam DYW family of nucleic acid deaminases 342 434 IPR032867 GO:0008270
Aev03g1654 434 Gene3D Tetratricopeptide repeat domain 1 79 IPR011990 GO:0005515
Aev03g1654 434 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 162 197 IPR002885 -
Aev03g1654 434 Pfam PPR repeat family 126 174 IPR002885 -
Aev03g1654 434 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 127 161 IPR002885 -
Aev03g1654 434 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 25 59 IPR002885 -
Aev03g1654 434 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 1 422 - -
Aev03g1654 434 PANTHER OS11G0661000 PROTEIN 1 422 - -
Aev03g1654 434 Pfam PPR repeat 28 56 IPR002885 -
Aev03g1654 434 Pfam PPR repeat 1 23 IPR002885 -
Aev03g1654 434 Pfam PPR repeat 202 226 IPR002885 -
Aev03g1654 434 TIGRFAM PPR: pentatricopeptide repeat domain 129 163 IPR002885 -
Aev03g1654 434 TIGRFAM PPR: pentatricopeptide repeat domain 28 57 IPR002885 -
Aev03g1654 434 TIGRFAM PPR: pentatricopeptide repeat domain 164 198 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g1654 Aev-Chr3 18355531 18356835 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g1654 1 434 Glycoside Hydrolase AT3G49170 41.553 1.08e-117 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g1654 - - adu:107482332 771.155