Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g1646 ATGAAAATCCAAATCATTGTCCTACTTTTGATCTTTGTTTGTGTTTTACCAAGCTTTTGTGCTCCAAAAATGCTTGCGGAAGACCCTAGCTTCAATGTTGTTGACTATGGTGCCAAAGGAGATGGTCAAACAGATGATTCACAAGCTTTTGTGAAAACATGGCAAGCCACGTGTAGTGCAACTCAAGACTTGTCAACTCTAATCATACCTAAAGGGAGAACCTTCATGTTGCAGCCTATTTCATTCCAAGGTCCTTGCACACCTGCAACTATAAATTTTAAGTTACAGGGCACTATCATTGCTCCAAGTAGAGTTGAGTCTTGGAAATGGCCAGATAATAATGATAAGGAAACATGGCTGCACTTCTCTGGCATAAGTGACCTTATTATCGATGGTGGTGGAATTATTGATGGTCAAGGTGCTCCATGGTGGACTTGCGAGAAATGTGATAGACCAACTGCTCTACATTTCCATGATTGCCCAAATATGAAACTTCATGGATTGACACACATAAACAGTCCTCAAAATCACATAAGTATAAATGCGTGTAATGACTCAAGGGTTTCAAATCTTCATATTAATGCACCAGAGGATAGTCCAAATACAGATGGAATTGATATCTCAGAATCATCCAATGTGATCATCACACATTCTACTATGAAAACCGGTGATGATTGCATTGCAATTAATGGTGGTTCCACCTTCATCAACATATCAAATATTTATTGTGGACCAGGCCATGGCATTAGTGTTGGAAGCCTTGGAAGAGATGGGGCTCATGAAACAGTAGAGGAAATACACGTGAGAAATTGCACTTTTAATGGAACTCAAAATGGAGTTAGAATCAAGACGTGGATTGGAGGTTCAGGATATGCAAGAAAAATAACATTCGATGATATTAAGATGATTGGAGCAGATAATCCTGTGATCATTGACCAACAATATAATTCACATTTTTATGGAATGGAAGTACCAAAAGCAGTGCAAGTGAGTGATGTTACTTACCGCAAAGTGAGAGGCACATCGAGTTCTAACAATGTGGTGCAATTAAATTGTGATTCCATAGGGTGCACCAATATTGTGATGGAAGGGGTTAATATAACTTCTATAGTTGGAGACAAAACATATGCTTCTTGTCAAAATGCAAAAGGTGTGTGTTTATCGTGTAATCCTAAAGTCCCATGTCTTTCATCACATAGTACTAAACTTTATGGATGA 1218 0.3842 MKIQIIVLLLIFVCVLPSFCAPKMLAEDPSFNVVDYGAKGDGQTDDSQAFVKTWQATCSATQDLSTLIIPKGRTFMLQPISFQGPCTPATINFKLQGTIIAPSRVESWKWPDNNDKETWLHFSGISDLIIDGGGIIDGQGAPWWTCEKCDRPTALHFHDCPNMKLHGLTHINSPQNHISINACNDSRVSNLHINAPEDSPNTDGIDISESSNVIITHSTMKTGDDCIAINGGSTFINISNIYCGPGHGISVGSLGRDGAHETVEEIHVRNCTFNGTQNGVRIKTWIGGSGYARKITFDDIKMIGADNPVIIDQQYNSHFYGMEVPKAVQVSDVTYRKVRGTSSSNNVVQLNCDSIGCTNIVMEGVNITSIVGDKTYASCQNAKGVCLSCNPKVPCLSSHSTKLYG* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g1646 405 PANTHER - 23 396 - -
Aev03g1646 405 SUPERFAMILY Pectin lyase-like 19 397 IPR011050 -
Aev03g1646 405 PANTHER - 23 396 - -
Aev03g1646 405 SMART pbh1 233 253 IPR006626 -
Aev03g1646 405 SMART pbh1 292 313 IPR006626 -
Aev03g1646 405 SMART pbh1 183 209 IPR006626 -
Aev03g1646 405 SMART pbh1 263 284 IPR006626 -
Aev03g1646 405 SMART pbh1 210 231 IPR006626 -
Aev03g1646 405 Gene3D - 22 402 IPR012334 -
Aev03g1646 405 Pfam Glycosyl hydrolases family 28 62 385 IPR000743 GO:0004650|GO:0005975
Aev03g1646 405 ProSitePatterns Polygalacturonase active site. 240 253 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g1646 Aev-Chr3 18251920 18255152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g1646 5 396 Glycoside Hydrolase AT5G17200 43.499 6.77e-119 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g1646 K01184 - rcu:8287292 422.165