LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aev03g1617	ATGAGTGCAAAGCTTGATTCAACATCTGCTGCGATGTCTGGACCTTCATCTGTAGCACCTAATAGTGGCCAAAAGCTCTCTATATTTTCTGCTAGATCTGGATTCGTCATCCCTAAAAACAAATTATCAGGTTCATTAGTTCCTGTTTTCCGAGGGGATAAAAAACATGGGGTCACTGGCGCCATTAATGAAGAAAGTTCCAAACAAATTGAGAGGAAAACAAAGTGGGGACCTGATTTGACGCAGGACGCAGCTGTCAAGAGGGCGAAGGCTTTAGCTTTACAGATTCGAGTAGATCAAATTACAAAGCTATTAGAATCAGAAAAATCAGAGGTCGGAAGCCCTCAGAATCCAGATCAAAGCAACCCTGGCCCTCAGATTGACAGCAAGAAGTCAGAAATGCTGGAACTTGAAAAGCGGGAAGCAATAGGTGAAATAATAAAACTAGATCCTAGTTACAAGCCTCCACCTGGTTTCAAACCACTGTTAAAAGAGGCCAGTATTCCTTTGCCTGTCAAAGAATATCCTGGGTACAATTTCATTGGTCTAATATATGGGCCTGAAGGTGATAATCAAAAGAGACTAGAACAGGAAACTGGTGCCAAGATAAAAGTTCATGGAATCAAAGCTGACACAGGAGAGAAAGGTGAAATTAAACCAGGAACTGATATCAAATGCAGTTACAACGAGATACATGTTAATATATCAGCTGATAGTTTTGATAAAGTGGATGCAGCAGTGTCCATCATTGAACTACTAATTACCTCTGTAACTGGAAATTTAGCTGCTGGTTCCACACCCTCTGTATCCGGGGTTGGCACTAACGTTGCGAGTCAAAGCCAAGATGCGCCACCTTCTCATCCAGTCTCTACAGCTCTGGAAAATCAGGTTGTGGTACGACCAATGGCTAGTTCACATATGCATGGGGATAGCCTTCAATACTCTGGTCCATGGTTTTCTGCAGTTCCATCTCATAACCTTGCATTTCCTCCTTCTGGTAATATAGCCCCTCAAAATCCATCAGGTCTTCCTAGAGCTCCCCATTTTCCGCCACAAACAGTGAATCCTTCAAACATGGCTTCAGCTTTTGGTGTTCAACCTGTACCTCTTGCTGCATTCCACCATACTATTCCAAATCAACATGTTTCTATGCAAGCACCACCAATGAGACAGATTTTACAGCATGCACATATGACTCAGGCAAGTCCAGTCGGTCAAATTGGCCCCCCAAGAAATCATTTGATATCTGGGCAGAGTTTTTCTGCTCCAACAAATGCTTCAATTTCATTTCCAGTTAGTTTAAGCCAGCCAAGACCAATAGGACAACTCCAGACACCAGTGTCTTCAATGCCTCTACCTATGTCTGGTATATCACCTGCATCAATACCTAACCAACCATTGACCCCCCTCGGGGACACTTCTGGACGAAATGTTGCGCCTGTCACCTCTAAAGTGTCTTCAGATCTCAGCAACATGGGGCCAGTAGCTCCCCAGGTGGCTCCATCTGCAAGACCTCTTTCTCTACATCCACAACCAGATGCTGCATTCAAGCCATTACAATCAAATATGTCAATGGCACCACGATCTGCACCATTTCCTCCACATCAAGCAGGAATTTCTCCTAGACTGCCATCGTCTTTAGGACCAATGCCTCTACCAGTATCTGCACCTCCTCATTCATCTGTAAACCATTTACTGGGATCTGTTTCATTTCCTTCACCTGGAATTTCCCCTTCAGTTCCATTACCTCAGCAATCTGGAATACCTAATCCTGCTTCTAGAGTTACTCCATATCACAGCCATGTTAAGCCACCAGCTTTGACAGCTTCAAATTCAGGGAACTTTACTTTCCAATCGCAGCGGCCCAGTGCAGATAGTCAAGTGGTTTCCAGAGAAAACAGTCAAGCTACCATGCAGGGTGGTATACTAGAGCCACCTCCTGGTCCACGACCTCCTCCATTTGGGTTCACAGTTCCCAATCGACCTTTTCAAACCTTTCCAAGGACCCAACTCCCCAACCAGGTGGATCATACACAACCTCATGTGTCTGCTGTACCATTTGGGAGAAGACCAGGCTCAGTCACAATTCCACCCAGACACAATGCATTTCCATATGCTGGTCAACCTCCATCTAGATCTCCAGTGCCACAAATGGGTATGAAGAACTTCATTTCTGCCCCTCAAATGCCTAATTTGCCGAACCCGGGTGTTCCAAGAGTTCAGCAAAATTATCCTTCTCAGAAGACATGGCCCGGTATCCCCATGCCTCTGAATCAGAAGTTTGGTAACAATCCTTCCATTGGTTCTAGTAAGCCAGCATACCCTGCGGACCAGATTTATGATCCCTTTTCACCTTCTTCTGTTGCGCCTCCATAG	2376	0.4495	MSAKLDSTSAAMSGPSSVAPNSGQKLSIFSARSGFVIPKNKLSGSLVPVFRGDKKHGVTGAINEESSKQIERKTKWGPDLTQDAAVKRAKALALQIRVDQITKLLESEKSEVGSPQNPDQSNPGPQIDSKKSEMLELEKREAIGEIIKLDPSYKPPPGFKPLLKEASIPLPVKEYPGYNFIGLIYGPEGDNQKRLEQETGAKIKVHGIKADTGEKGEIKPGTDIKCSYNEIHVNISADSFDKVDAAVSIIELLITSVTGNLAAGSTPSVSGVGTNVASQSQDAPPSHPVSTALENQVVVRPMASSHMHGDSLQYSGPWFSAVPSHNLAFPPSGNIAPQNPSGLPRAPHFPPQTVNPSNMASAFGVQPVPLAAFHHTIPNQHVSMQAPPMRQILQHAHMTQASPVGQIGPPRNHLISGQSFSAPTNASISFPVSLSQPRPIGQLQTPVSSMPLPMSGISPASIPNQPLTPLGDTSGRNVAPVTSKVSSDLSNMGPVAPQVAPSARPLSLHPQPDAAFKPLQSNMSMAPRSAPFPPHQAGISPRLPSSLGPMPLPVSAPPHSSVNHLLGSVSFPSPGISPSVPLPQQSGIPNPASRVTPYHSHVKPPALTASNSGNFTFQSQRPSADSQVVSRENSQATMQGGILEPPPGPRPPPFGFTVPNRPFQTFPRTQLPNQVDHTQPHVSAVPFGRRPGSVTIPPRHNAFPYAGQPPSRSPVPQMGMKNFISAPQMPNLPNPGVPRVQQNYPSQKTWPGIPMPLNQKFGNNPSIGSSKPAYPADQIYDPFSPSSVAPP*	792

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aev03g1617	791	SMART	kh_6	162	255	IPR004087	GO:0003676
	Aev03g1617	791	PANTHER	RNA-BINDING KH DOMAIN-CONTAINING PROTEIN	19	787	-	-
	Aev03g1617	791	PANTHER	RNA-BINDING PROTEIN RELATED	19	787	IPR045071	-
	Aev03g1617	791	MobiDBLite	consensus disorder prediction	266	289	-	-
	Aev03g1617	791	MobiDBLite	consensus disorder prediction	747	771	-	-
	Aev03g1617	791	ProSiteProfiles	Type-1 KH domain profile.	179	205	-	-
	Aev03g1617	791	Gene3D	K Homology domain, type 1	159	267	IPR036612	GO:0003723
	Aev03g1617	791	SUPERFAMILY	Eukaryotic type KH-domain (KH-domain type I)	166	260	IPR036612	GO:0003723
	Aev03g1617	791	MobiDBLite	consensus disorder prediction	1	23	-	-
	Aev03g1617	791	Pfam	KH domain	179	251	IPR004088	GO:0003723
	Aev03g1617	791	MobiDBLite	consensus disorder prediction	107	128	-	-
	Aev03g1617	791	MobiDBLite	consensus disorder prediction	747	791	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aev03g1617	Aev-Chr3	17802414	17813094	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aev03g1617	K13095		-	gmx:100777227	1024.62