Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g1572 ATGAGTATGTCATTTTCCTTGGCACCAAGTCCTTCTTCCATCACAGGAAGTAATAGTAATAGAAGATCATTTTGTACAAGAATTGGTGCTATAAGGTCTGAAGTAACTACTGTGGCTCCCAAACCAAGAAGAGATGGTAGTAAGTTTCCTCAGTTGTCAAAACAAGGTTTTCCTCTTGCAGATTTACATGTGCAAGAGGTTGTTGAGAGGCAGTCTCAGAGTGCTGATTTTGCCATTGCAAGTCCTTGTAGCAAGCTGCGGTTCGAGCCCGGTTTTCTGAAGGATGCATATGAAATGTGTAGGCAGATCTGTGCCGAATATGCCAAGACCTTCTATCTAGGAACTTTGCTTATGACAGAAGAAAGACAGAAGGCTATATGGGCAATATATGTTTGGTGCAGGAGGACGGATGAACTGGTCGATGGTCCTAATGCTGAGTATATGAGCTCTGCAGTTCTTGATAGGTGGGAAGAGAGATTGCATGACACTTTCCATGGACGCCCCTATGATATGCTTGATGCTGCTCTTACTGATACAGTCTCCAAGTTTCCCTTGGATATTAAGCCTTTCAGGGACATGATAGAAGGTATGAGAATGGATACAAGGAAAACGAGATACACAAATTTTCAAGAGTTATATCTTTATTGCTACTATGTAGCAGGAACAGTTGGCTTAATGAGTGTTCCAATAATGGGCATTGCCCCGGAATCTATAATCCCTGCTCAGAGTGTATACAATGCAGCACTGTATCTAGGAATTGGAAATCAATTGACAAACATTCTTAGAGATGTGGGAGAAGATGCATTAAGAGGTAGAGTCTACCTCCCACAAGATGAACTGGCACAGTTTGGCTTGTGTGAAGAGGATATCTTCTCTAGGAAGGTCACTGAAAGATGGAGAGAATTTATGAAACAGCAGATTACAAGGGCAAGGTTCTTCTTCAACCTGTCAGAAGAAGGAGCTTCTCAGCTTGATAAGGCCAGCCGATGGCCGGTTTGGTCCTCACTAATATTGTATCGTAAGATATTGGATGCAATTGAAGACAACGGTTATGACAATTTGACAAAACGAGCCTACGTAGGACGAACTAAGAAGTTTCTGATGTTGCCTCTAGCTTACACTAGATCTGTCTCAAGTCCCAACACGAAATTAGGTCCTTCGATACCAAGGCTAATCTAG 1179 0.4232 MSMSFSLAPSPSSITGSNSNRRSFCTRIGAIRSEVTTVAPKPRRDGSKFPQLSKQGFPLADLHVQEVVERQSQSADFAIASPCSKLRFEPGFLKDAYEMCRQICAEYAKTFYLGTLLMTEERQKAIWAIYVWCRRTDELVDGPNAEYMSSAVLDRWEERLHDTFHGRPYDMLDAALTDTVSKFPLDIKPFRDMIEGMRMDTRKTRYTNFQELYLYCYYVAGTVGLMSVPIMGIAPESIIPAQSVYNAALYLGIGNQLTNILRDVGEDALRGRVYLPQDELAQFGLCEEDIFSRKVTERWREFMKQQITRARFFFNLSEEGASQLDKASRWPVWSSLILYRKILDAIEDNGYDNLTKRAYVGRTKKFLMLPLAYTRSVSSPNTKLGPSIPRLI* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g1572 392 ProSitePatterns Squalene and phytoene synthases signature 1. 215 230 IPR019845 GO:0016765
Aev03g1572 392 Gene3D Farnesyl Diphosphate Synthase 91 371 IPR008949 -
Aev03g1572 392 Pfam Squalene/phytoene synthase 107 362 IPR002060 GO:0009058
Aev03g1572 392 MobiDBLite consensus disorder prediction 1 21 - -
Aev03g1572 392 CDD Trans_IPPS_HH 98 365 IPR033904 GO:0004311
Aev03g1572 392 SFLD Isoprenoid Synthase Type I 94 375 - -
Aev03g1572 392 ProSitePatterns Squalene and phytoene synthases signature 2. 251 276 IPR019845 GO:0016765
Aev03g1572 392 SUPERFAMILY Terpenoid synthases 95 377 IPR008949 -
Aev03g1572 392 PANTHER PHYTOENE SYNTHASE, CHLOROPLASTIC 15 382 - -
Aev03g1572 392 SFLD Phytoene synthase like 94 375 IPR044843 GO:0004311
Aev03g1572 392 PANTHER BIFUNCTIONAL LYCOPENE CYCLASE/PHYTOENE SYNTHASE 15 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g1572 Aev-Chr3 17224967 17233347 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g1572 K02291 - gmx:100782394 579.711