Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g1187 ATGGGTGCTGCGGGCTCCAAGCTCGAGAAGGCTCTGGGCGATCAATTCCCCGAAGGAGAACGTTATTTCGGCCTCGAGAATTTCGGCAACACTTGTTACTGCAACAGCGTTTTGCAGGCACTATACTTCTGTGTCCCATTTCGCGAACAATTGCTAGAGTATTATGCAAATGGCAAAAGTGCAGTAGATGCAGAGGAGAATCTTTTAACTTGCTTAGCTGACTTATTTTCGCAAATAAGTTCCCAGAAGAAGAAAACAGGGGTCATTGCTCCCAAAAGATTTGTACAGAGGTTGAAAAAACAGAATGAACTCTTCCGTAGTTATATGCACCAGGATGCCCACGAATTCTTGAACTTTTTGTTAAATGAACTCGTTGACATTCTGGAGAAAGAGGCCCGGGCTGCCAAAGATGATCAAGAGGCATTACCACCTTCTGAAAACGATGCAAATGGGCCCATGCCTGGTCCAGCTAATGGAGCTAAAAAAGAACCTTTAGTTACTTGGGTTCACAAAAATTTTCAGGGAATACTCACCAACGAGACAAGGTGCTTGCAATGTGAAACAGTGACTGCTAGGGATGAAACATTTTTTGACTTGAGCCTTGATATTGAACAAAACAGTTCGATTACGAGCTGTTTGAAAAACTTCAGTTCGACAGAGACATTGAATGCCGAAGACAAATTTTTTTGTGACAAGTGCTGCAGCTTGCAAGAAGCTCAGAAGAGGATGAAGATAAAGAAACCGCCTCAGATCTTGGTCATCCATCTCAAGCGATTTAAGTACATTGAACAGCTCGGTCGCTACAAGAAGCTGTCTTACCGGGTTGTCTTTCCCCTAGAGCTAAAGCTGAGTGATACTGTTGAGGAAGCAGATATTGAGTATTCTCTATTTGCAGTAGTTGTCCATGTCGGTAGTGGCCCCAACCATGGCCACTATGTCAGCCTTGTGAAAAGCCATAACCACTGGCTATTTTTTGACGACGAAAACGTCGAGATGATTGATGAGTCCGCCGTTCAGACATTCTTTGGGTCATCACAAGAGTATTCCAGTAATACAGACCATGGTTACATTTTGTTCTACGAGAGCATCGACTCTGGTAACAAGAACTAG 1110 0.436 MGAAGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLEYYANGKSAVDAEENLLTCLADLFSQISSQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEARAAKDDQEALPPSENDANGPMPGPANGAKKEPLVTWVHKNFQGILTNETRCLQCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKPPQILVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSDTVEEADIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSSQEYSSNTDHGYILFYESIDSGNKN* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g1187 369 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 1 366 - -
Aev03g1187 369 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 294 312 IPR018200 GO:0004843|GO:0006511
Aev03g1187 369 CDD Peptidase_C19G 24 361 - -
Aev03g1187 369 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 23 363 IPR028889 -
Aev03g1187 369 SUPERFAMILY Cysteine proteinases 21 363 IPR038765 -
Aev03g1187 369 Pfam Ubiquitin carboxyl-terminal hydrolase 23 360 IPR001394 GO:0004843|GO:0016579
Aev03g1187 369 PANTHER UBIQUITINYL HYDROLASE 1-RELATED 1 366 - -
Aev03g1187 369 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 24 39 IPR018200 GO:0004843|GO:0006511
Aev03g1187 369 Gene3D Cysteine proteinases 5 362 - -
Aev03g1187 369 MobiDBLite consensus disorder prediction 135 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g1187 Aev-Chr3 10744518 10749837 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g1187 24 334 Miscellaneous Gene Families AT4G31670 26.646 2.63e-30 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g1187 K11842 - gmx:100305765 711.835