LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aev03g0967	ATGGCGGATCAGTTAGCGAAAGCTGAGGAATTTGAGAAGAAAGCTGAGAAAAAGCTCACCGGATGGGGCTTGTTTGGCAACAAATACGAGGATGCTGCTGATCTCTTTGATAAAGCCGCAAATTCCTTCAAGCTCGCTAAATCATGGGACAAAGCAGGATCAACATACCTCAAGTTGGCAAATTGTCATTTGAAGTTGGAAAGCAAGCATGAAGCTGCCCAAGCCTATGTTGATGCTGCACATTGCTACAAAAAGACCAATATAAATGAGGCTGTATCTTGCTTAAACAATGCTGTAAATCTTTTCTGTGACATTGGAAGACTGTCTATGGCAGCTAGATATTTGAAGGAAATTGCTGAGTTGTATGAGTCTGAACAGAATATTGAGCAGGCTGTTGTTTACTACGAAAAAGCAGCTGACTTTTTTCAAAACGAAGAAGTTACAACTACTGCAAACCAATGCAAGCAAAAGGTTGCTCAATTTGCTGCTCAGCTAGAACAGTATCAGAAATCAATTGAGATTTATGAAGAGATAGCTCGCCATTCTCTCACCAATAACTTGTTGAAGTATGGAGTTAAAGGACATCTTCTTAATGCTGGCATTTGCCAACTCTGTAAAGGGGATGTGATTGCTATAACCAATGCATTAGAAAAATATCAGGAATTGGATCCAACATTTTCAGGAACACGCGAATATAGACTTTTGGCAGATATTGCTGCTGCAATCGATGAAGAGGATGTTGGAAAGTTCACTGATGTTGTCAAGGAATTTGATGGCATGACCCCACTGGATTCTTGGAAGACGACGCTTCTTTTGAGGGTGAAGGAAAAGCTGAAGGCCAAAGAACTCGAGGAGGATGATCTCACCTAA	870	0.4092	MADQLAKAEEFEKKAEKKLTGWGLFGNKYEDAADLFDKAANSFKLAKSWDKAGSTYLKLANCHLKLESKHEAAQAYVDAAHCYKKTNINEAVSCLNNAVNLFCDIGRLSMAARYLKEIAELYESEQNIEQAVVYYEKAADFFQNEEVTTTANQCKQKVAQFAAQLEQYQKSIEIYEEIARHSLTNNLLKYGVKGHLLNAGICQLCKGDVIAITNALEKYQELDPTFSGTREYRLLADIAAAIDEEDVGKFTDVVKEFDGMTPLDSWKTTLLLRVKEKLKAKELEEDDLT*	290

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aev03g0967	289	Coils	Coil	151	178	-	-
	Aev03g0967	289	Pfam	Soluble NSF attachment protein, SNAP	7	278	-	-
	Aev03g0967	289	CDD	SNAP	19	278	IPR000744	GO:0006886
	Aev03g0967	289	PANTHER	ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN	1	289	-	-
	Aev03g0967	289	SUPERFAMILY	TPR-like	7	280	IPR011990	GO:0005515
	Aev03g0967	289	Gene3D	Tetratricopeptide repeat domain	4	288	IPR011990	GO:0005515
	Aev03g0967	289	PRINTS	NSF attachment protein signature	91	108	IPR000744	GO:0006886
	Aev03g0967	289	PRINTS	NSF attachment protein signature	152	175	IPR000744	GO:0006886
	Aev03g0967	289	PRINTS	NSF attachment protein signature	224	244	IPR000744	GO:0006886
	Aev03g0967	289	PRINTS	NSF attachment protein signature	119	136	IPR000744	GO:0006886
	Aev03g0967	289	PRINTS	NSF attachment protein signature	28	47	IPR000744	GO:0006886
	Aev03g0967	289	PRINTS	NSF attachment protein signature	183	202	IPR000744	GO:0006886
	Aev03g0967	289	PRINTS	NSF attachment protein signature	255	275	IPR000744	GO:0006886
	Aev03g0967	289	PANTHER	SOLUBLE NSF ATTACHMENT PROTEIN SNAP	1	289	IPR000744	GO:0006886
	Aev03g0967	289	Coils	Coil	271	289	-	-
	Aev03g0967	289	SMART	tpr_5	53	86	IPR019734	GO:0005515
	Aev03g0967	289	SMART	tpr_5	112	145	IPR019734	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aev03g0967	Aev-Chr3	8014367	8019480	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aev03g0967	K15296		-	gmx:100812517	491.115

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aev07g0546	07	3366260	3369005	Aev03g0967	03	8014367	8019480	ECH
	Aev03g0967	03	8014367	8019480	Aev03g0967	03	8014367	8019480	ECH
	Aev03g0967	03	8014367	8019480	Aev07g0546	07	3366260	3369005	PCT