Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g0575 ATGCTCATTCCAAAACTGAAACTTGCATGCTCCATACAACAACTGAAGAAGAAGAAGCCTCAAGTACTCTGTTTCATCACAACGCTAATACCCTCTCACTCCAACAATTCCCACGAGCCACTTCCATCTCACTACCCCATTGACCCTATCTACCTCAAGAACCGCGAAATCGACGCGTTAATAAAATCTAAGAACCTCAATTCAGCACTCTCAATGTTCCACAGAACGCCCCTTTGTGACGCTGTCACCTACAACTTGCTCATTTCAGGGCACGCCACGTGCCATGGCCCACCCGCACGTGCCCTTCGTCTCTACGCCGAAATGGGTTCGCTTGGGATTAAAGAAACCCCAACCACGTTCACATCTGTTATATCTCTTTGTACCAATCATGGGTTCTTCAGAGACGGTGTTCAGGTTCATTGCAGGGTGATCAAGTTCGGATTTTTGTCGAATGTGTTCGTTGGTGGGGCACTCGTTGGGTTGTATATGCATTTGGGGCTAAGTGGGATGGCACTGAAAGTGTTTGATGAGTTGCCACAGAGAAATTTGGCTGTTTGGAATGTGGTTCTGCGTGGGTTAGTTGAACTGGGTCGTGTTGGTGATGCACTTGTTGGGTTTTATTACTCTATGATGGGGTTTGAAGGTGTGGAGCCAAATGGGGTCACGTTTTGTTATTTGCTTAGGTGGTGTGGTGTTCAGAGAAGGTTGCATGAAGGGGAGAAGATTCAAGGAAGAGTTTTGAAGATGGGTTTGGTGGAATCCAATGTTTTTGTGGCTAATGCTCTGGTGGATTTTTACTCTGCTTGTGGGTGCTTGGTTGGTGCAATGAAGTGTTTTGAGGCCATACCGGTTGAGGATGTTATTTCATGGAACTCTTTGGTTTCTGTTTATGCAGAGAATGATTTGGTGTGTGAAGCTTTGCAGGTGTTTGCTGTTATGCAATTGTGGGGGAAAAGGCCATCTGTGCGTTCATTGGTGGGACTTTTGAATTTGTGTAGTAGAAGTGAAGACATTGGATTGGGGAAGCAGGTTCACTGTTGTGTTGTGAAATTGGGTTTTGATGAAGTGAGTGTGCATGTTCAATCAGCTTTGATTGATATTTATGGAAAATGCGGCGAGATGGAGAGTTCTGTAGCTGTGTTTGAATGCCTCCATGAGAGAACATTGGAGTGTTGCAATTCATTGATGACCTCTCTTTCTCATTGTGGTGCCACTGAAGACGTGGTGGAATTGTTTGGTTTAATGTTTGATGAAGGAATTAGACCAGATGAAGTAACCTTCTCCACCACTTTGAAGGCATTATCAGTTTCTGCCTTAGCAAGCTTCACGAGCTCCCAATTACTTCATTGTTTTGCATTAAAATCTGGGCTAGAAGGAGATGCTGCAGTTGCATGTTCCCTAATGAATGCATATTCTAGATCTGGGAATGTGGAACATTCTCGTCAGATTTTTGAGGCCCTTCCTTCTCCAAATGCTGTTTGTTTCACATCTATGATCAATGGCTACGCCCGAAACGGAATGGGGGAAGAAGGGCTTGCAGTGCTTCAAGCCATGATTGAGAAGGGCCTAAAACCAGACAAAGTTACATTCTTATGTGCATTAACGGGTTGCAATCACAAGGGGATGGTTGAGGAAGGAAGATTAGTCTTCGACTCCATGAAATCTCGTCATGGGGTTTGCCCAGATCGCCAGCATTTTTCATGCATGGTGGATCTCTTATGCCGTGCCGGACTTATATACGAAGCCGAGGAGTTGCTCTTACAGGCACTAGGGGAAAGAGACTGTGTTATGTGGAGTTCTTTGCTGAGAAGTTGCATGGTACACAAGAATGATGAAGTTGGAAGTAGAGCAGCTCAAGTTTTGGTTGATCTAGACCCTGATGACCCTGCAGTGTTGCTGCAAGCTTCAAATTTTTATGCCGAAATGGGGAAGTTTGATGCATCAAGGCAAATCAGAGAGGTTGCATTAGCAAGGAAGATGACAAGGGAGATTGGTCATAGTTTGATTGAGATAAAACATTGA 2022 0.4466 MLIPKLKLACSIQQLKKKKPQVLCFITTLIPSHSNNSHEPLPSHYPIDPIYLKNREIDALIKSKNLNSALSMFHRTPLCDAVTYNLLISGHATCHGPPARALRLYAEMGSLGIKETPTTFTSVISLCTNHGFFRDGVQVHCRVIKFGFLSNVFVGGALVGLYMHLGLSGMALKVFDELPQRNLAVWNVVLRGLVELGRVGDALVGFYYSMMGFEGVEPNGVTFCYLLRWCGVQRRLHEGEKIQGRVLKMGLVESNVFVANALVDFYSACGCLVGAMKCFEAIPVEDVISWNSLVSVYAENDLVCEALQVFAVMQLWGKRPSVRSLVGLLNLCSRSEDIGLGKQVHCCVVKLGFDEVSVHVQSALIDIYGKCGEMESSVAVFECLHERTLECCNSLMTSLSHCGATEDVVELFGLMFDEGIRPDEVTFSTTLKALSVSALASFTSSQLLHCFALKSGLEGDAAVACSLMNAYSRSGNVEHSRQIFEALPSPNAVCFTSMINGYARNGMGEEGLAVLQAMIEKGLKPDKVTFLCALTGCNHKGMVEEGRLVFDSMKSRHGVCPDRQHFSCMVDLLCRAGLIYEAEELLLQALGERDCVMWSSLLRSCMVHKNDEVGSRAAQVLVDLDPDDPAVLLQASNFYAEMGKFDASRQIREVALARKMTREIGHSLIEIKH* 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g0575 673 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 388 422 IPR002885 -
Aev03g0575 673 TIGRFAM PPR: pentatricopeptide repeat domain 528 562 IPR002885 -
Aev03g0575 673 TIGRFAM PPR: pentatricopeptide repeat domain 493 526 IPR002885 -
Aev03g0575 673 TIGRFAM PPR: pentatricopeptide repeat domain 391 424 IPR002885 -
Aev03g0575 673 PANTHER OS01G0913400 PROTEIN-RELATED 45 668 - -
Aev03g0575 673 Gene3D Tetratricopeptide repeat domain 233 342 IPR011990 GO:0005515
Aev03g0575 673 Gene3D Tetratricopeptide repeat domain 343 439 IPR011990 GO:0005515
Aev03g0575 673 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 80 115 IPR002885 -
Aev03g0575 673 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 491 525 IPR002885 -
Aev03g0575 673 Gene3D Tetratricopeptide repeat domain 52 210 IPR011990 GO:0005515
Aev03g0575 673 Gene3D Tetratricopeptide repeat domain 440 627 IPR011990 GO:0005515
Aev03g0575 673 Pfam PPR repeat 362 387 IPR002885 -
Aev03g0575 673 Pfam PPR repeat 119 148 IPR002885 -
Aev03g0575 673 Pfam PPR repeat 288 315 IPR002885 -
Aev03g0575 673 Pfam PPR repeat 466 485 IPR002885 -
Aev03g0575 673 Pfam PPR repeat 566 587 IPR002885 -
Aev03g0575 673 Pfam PPR repeat 82 113 IPR002885 -
Aev03g0575 673 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 286 320 IPR002885 -
Aev03g0575 673 Pfam PPR repeat family 391 434 IPR002885 -
Aev03g0575 673 Pfam PPR repeat family 490 537 IPR002885 -
Aev03g0575 673 PANTHER - 45 668 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g0575 Aev-Chr3 4211786 4213807 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g0575 80 671 Glycoside Hydrolase AT3G49170 29.519 7.23e-81 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g0575 - - lja:Lj0g3v0314629.1 937.947
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev03g0575 03 4211786 4213807 Aev03g0575 03 4211786 4213807 ECH