Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g0574 ATGGACAAATTCTTCTTGGTTTCCTTTCTCGGCTTGCTGATAGCGGCTCATGGAGTTGCAGGAAGCATGATGTTTGACAACATTGGTATACTTGAAGAACTTGCAAGCCTGGACACAGAAGAAGAAAATGAGGTAGAACTCTCTGACATTCCTTCATGGAGAAGCGAGCGTGGTGGAAAGGTTCTTGTGAATGTGGATAGTTTCGGTGCTGCTGGGGATGGAGAATCTGATGATACTGAGCCATTTAGAAAAGCATGGAATATTTCCTGCTCTACACCAAAATCCGTGTTCTTAGTTCCCCAAGGACGCCGCTACCTAGTCAATGCTACAAAATTCATAGGGCCTTGTGCAGGCAATCTAATCATCCAGATTGATGGAACAATAGTAGCACCAGACGAGCCTAAGAACTGGGATCCAAAGCTACCACGGGTTTGGCTCGATTTTTCCAAATTGGAGAAAGCTGTTTTCCAAGGTGCCGGAGTTATAGATGGCTCAGGTAGCAAATGGTGGGCAGCATCATGCAAAAAGAACAAGTCCAATCCTTGCAAAGGTGCACCAACAGCATTAACCATTGATTCAAGCACAGGTATAAAAGTGAAGGGAATTACTGTACAGAATAGCCAACAGATGCATTTTACAATATCAAGATGTGATTCTGTTAGAATTTATGGGGTCAAAGTTTCTTCACCTGGAGACAGCCCAAACACTGATGGAATTCATATTAGTGAATCAACAAATGTCATAATCCAAGACAGCAAGATTGGAACAGGGGATGATTGCATATCAATTGTGAATGCTAGCTCCAATATCAAAATGAAGAGAATTTATTGTGGTCCAGGACATGGAATCAGCATTGGAAGCCTTGGGAAAGACAACTCAACTGGCATAGTCACGAAAGTGATTTTGGATACAGCAGTTCTTAAGGATACTACCAATGGTGTCAGGATTAAGACTTGGCAGGGAGGTTCTGGATATGTTCGCGGGGTACGGTTTCAGAATGTGAGGATGGAAAATGCATCAAACCCTATTATTATAGATCAATTTTACTGTGATTCACCAACCTCTTGCCAAAACCAGACATCAGCTGTGGAGATAAGCGAGATCATGTACCAGAACATTAGCGGGACCACGAAAAGTGCTAAGGCGATTAAATTTGACTGCAGTGACACAGTTCCATGCAGCAACTTGGTTCTTAGCAATGTCGATTTGGAGAAACCGGATGGAACGGCGGAAGCATACTGCCACTCAGCTCAAGGTTTCGGCTATGGGGTTGTGAACCCTTCTGCTGATTGCCTCAATTCCAGCGATAAAGTTTCACAAGTTACCGAAGAATCAATCACAATCACGGAGGAGGAGGTGGACGAGGAGGAGGATATTATTCGTCACACTGAACTATAA 1398 0.4349 MDKFFLVSFLGLLIAAHGVAGSMMFDNIGILEELASLDTEEENEVELSDIPSWRSERGGKVLVNVDSFGAAGDGESDDTEPFRKAWNISCSTPKSVFLVPQGRRYLVNATKFIGPCAGNLIIQIDGTIVAPDEPKNWDPKLPRVWLDFSKLEKAVFQGAGVIDGSGSKWWAASCKKNKSNPCKGAPTALTIDSSTGIKVKGITVQNSQQMHFTISRCDSVRIYGVKVSSPGDSPNTDGIHISESTNVIIQDSKIGTGDDCISIVNASSNIKMKRIYCGPGHGISIGSLGKDNSTGIVTKVILDTAVLKDTTNGVRIKTWQGGSGYVRGVRFQNVRMENASNPIIIDQFYCDSPTSCQNQTSAVEISEIMYQNISGTTKSAKAIKFDCSDTVPCSNLVLSNVDLEKPDGTAEAYCHSAQGFGYGVVNPSADCLNSSDKVSQVTEESITITEEEVDEEEDIIRHTEL* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g0574 465 SUPERFAMILY Pectin lyase-like 61 432 IPR011050 -
Aev03g0574 465 PANTHER BNAA08G20470D PROTEIN 2 444 - -
Aev03g0574 465 SMART pbh1 326 347 IPR006626 -
Aev03g0574 465 SMART pbh1 244 265 IPR006626 -
Aev03g0574 465 SMART pbh1 297 318 IPR006626 -
Aev03g0574 465 SMART pbh1 267 287 IPR006626 -
Aev03g0574 465 SMART pbh1 217 243 IPR006626 -
Aev03g0574 465 Pfam Glycosyl hydrolases family 28 94 416 IPR000743 GO:0004650|GO:0005975
Aev03g0574 465 PANTHER - 2 444 - -
Aev03g0574 465 ProSitePatterns Polygalacturonase active site. 274 287 IPR000743 GO:0004650|GO:0005975
Aev03g0574 465 Gene3D - 53 464 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g0574 Aev-Chr3 4207024 4211127 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g0574 23 436 Glycoside Hydrolase AT1G23460 72.837 0.0 633
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g0574 - - gmx:100804067 803.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev03g0574 03 4207024 4211127 Aev03g0574 03 4207024 4211127 ECH