Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g0553 ATGACGCAGAATTGGATGAGGCGCATGGCGATGGTAGAAGCAGTAGCAAGCTCCACCCTTGTTCTTCCACCACCCATGCCTCCTCAGAAACCTATCATCACCCCTTTGTTCTCGCGCACCAAAACGACGCCGTATCTTATCTCTGTTCTCACTCCCCGTCGAACCTTCCTTTCTGCTTCACCTTCTTCTTCTCCTTCTCCTTCCTTAGCCACTCACTACAACTCCTCTGATTTCGATGCAGTAGATGGTGATTGCGTTGCGGTTCAAAAGAGCGGCTCAAAGGTGCTTCTTAAAGGAATGACTTACACTGAGCTTGAAAAATGGGTTCAATCTCGTGGGTACAGGCCTGCCCAGGCTATGATGTTATGGAAGCGTATCTATGGAAACAATATTTGGGCACATGACACTGATGAGTTGGAAGGTTTGAACAAAGATTTCAAGAAGATGTTGAGTGAGAATGCTGAGTTCAAGGCGCTTTCTTTTAAGGAGATTCGTACAGCAGCCGATGGAACTAGGAAGATTTTGTTCACATTGGATGATGGGATGGTCATAGAAACAGTTATCATACCTTGTGACAGAGGCAGGACTACGGTGTGCGTTTCAAGTCAAGTTGGTTGTGCCATGAATTGTCAATTTTGCTATACTGGAAGAATGGGTCTCAGGAGACATCTTACTGCCGCTGAAATAGTGGAGCAGGCTGTTTTTGCCCGACGACTGTTCACAAGTGAAGTCGGTTCCATCACCAATGTTGTCTTTATGGGCATGGGGGAACCGCTTCATAACGTTGATAACGTCATTAAAGCTGCAGATATTATGGTGGATGAGCAAGGGCTTCAATTCAGCCCCCGCAAGGTTACTGTTTCAACCAGCGGGCTCGTTCCTCAGCTCAAACGTTTCCTTCATGAATCCAAATGTGCGCTAGCCGTTAGTTTGAATGCTACTACTGATGAGATAAGAAACTGGATCATGCCTATAAATCGAAAGTATAAACTGGACTTGCTTCTTGAGACTCTTCGGGAGGAGCTTCGCCTCAAGAACAACTACAAAGTTCTATTTGAGTATGTGATGCTGGAAGGAATCAATGACAGTGATGACGATGCAAAGAGGCTTATTGAGCTTGTGAAGGGCATTCCTTGCAAGATCAATCTCATCTCATTCAATCCGCATAGTGGATCATTCTTCAGACCAACCAAAGAGGCAAGGATGATAGAGTTCCGAAACATGTTAGCCAGTGGAGGGTGCACGGTGTTTCTCCGGCTCAGTAGAGGCGATGACCAGATGGCTGCGTGCGGCCAGTTGGGCAAGCCCGGCAGCATCCAAGCTCCATTGCTCCGAGTACCACAGCAGTTCCAAATGGCAGTTTCAAGTCCATCCTGA 1377 0.4691 MTQNWMRRMAMVEAVASSTLVLPPPMPPQKPIITPLFSRTKTTPYLISVLTPRRTFLSASPSSSPSPSLATHYNSSDFDAVDGDCVAVQKSGSKVLLKGMTYTELEKWVQSRGYRPAQAMMLWKRIYGNNIWAHDTDELEGLNKDFKKMLSENAEFKALSFKEIRTAADGTRKILFTLDDGMVIETVIIPCDRGRTTVCVSSQVGCAMNCQFCYTGRMGLRRHLTAAEIVEQAVFARRLFTSEVGSITNVVFMGMGEPLHNVDNVIKAADIMVDEQGLQFSPRKVTVSTSGLVPQLKRFLHESKCALAVSLNATTDEIRNWIMPINRKYKLDLLLETLREELRLKNNYKVLFEYVMLEGINDSDDDAKRLIELVKGIPCKINLISFNPHSGSFFRPTKEARMIEFRNMLASGGCTVFLRLSRGDDQMAACGQLGKPGSIQAPLLRVPQQFQMAVSSPS* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g0553 458 ProSiteProfiles Radical SAM core domain profile. 192 425 IPR007197 GO:0003824|GO:0051536
Aev03g0553 458 Hamap Dual-specificity RNA methyltransferase RlmN [rlmN]. 94 439 IPR027492 GO:0030488|GO:0070475
Aev03g0553 458 Gene3D Aldolase class I 159 439 IPR013785 -
Aev03g0553 458 PANTHER 23S RRNA METHYLTRANSFERASE 61 441 IPR040072 -
Aev03g0553 458 SFLD Radical SAM 93 435 IPR007197 GO:0003824|GO:0051536
Aev03g0553 458 CDD Radical_SAM 205 408 - -
Aev03g0553 458 TIGRFAM rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 95 434 IPR027492 GO:0030488|GO:0070475
Aev03g0553 458 Pfam 4Fe-4S single cluster domain 205 308 - -
Aev03g0553 458 SFLD adenosine C2 methyltransferase (RlmN-like) 93 435 IPR004383 GO:0006364|GO:0008173
Aev03g0553 458 Gene3D - 94 157 - -
Aev03g0553 458 PANTHER RADICAL SAM SUPERFAMILY PROTEIN 61 441 - -
Aev03g0553 458 Pfam Radical SAM superfamily 201 367 IPR007197 GO:0003824|GO:0051536
Aev03g0553 458 SUPERFAMILY Radical SAM enzymes 194 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g0553 Aev-Chr3 4049985 4052916 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g0553 K06941 - gmx:100813692 697.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev03g0553 03 4049985 4052916 Aev03g0553 03 4049985 4052916 ECH