Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g0546 ATGGCACTTTGGCAGCATAACCTACTCTTCTCACCTCTCCTAATTATTATCCTTAGCTTATTAGCAACTTCGGTTTCATCAAGAAACAGGCCTTACACAACACCAAGTGTCACACCTTTGACAGATTCTTTCCCTCATGTCCCAATTAACTCTGCTTTTTCTAATGGTTTTGGACCCTCTCATTTCAAGCTTCTAAATAATGGGTCCATGGCCACTCTGGCTCTTGACAAAACCTCAGGTTCTGGCTTGGTGTCAAAAAACAGTTACTACTATGGATTCTTCAGTGCTGCAATCAAATTACCTGCTGGTATATCATCTGGAGTTGTAGTTGCTTTCTATTTGTCTAATTCAGAGAAGTTCCCACACAGCCATGATGAGATAGATATTGAACTTCTTAAGAGGAATGATTGGGTTATTCAAACAAATGTTTATGCCAATGGAAGTACCAGCACAGGAAGAGAAGAGAAATTCTACTTCTGGTTTGATCCAACTCAGCAGTACCATTACTATAGCATCTTGTGGAACAGTTATCACACAGTGTTCTTAGTGGACAACATTCCGGTGAGGGAATTCATACACAGCAATGCATACCCTTATGTTTATCCATCAAAGGCAATGTCAGTATATGCAACAATATGGGATGGATCAGAATGGGCAACACATGGAGGGAAATATGGAGTGAACTATAATTATGCACCATTTGTTGTTTCATTCTCAGAGATGGAACTTAGTGGATGCATATCTGATCCAACAGGATCAGGATCATGTTCTAAAGCCAGCACTTCAGGAACTGACCCTGTTAATGGACCAGAGTTCACTAAGCTGTCACAGCAACAGGTTTCAGCCATGGATTGGGCTAGAAGGAAGCTCATGTTTTACTCATACTGTAATGACAAGAACAGGTTCAAAGTCATGCCACCAGAATGCAACTAA 933 0.4073 MALWQHNLLFSPLLIIILSLLATSVSSRNRPYTTPSVTPLTDSFPHVPINSAFSNGFGPSHFKLLNNGSMATLALDKTSGSGLVSKNSYYYGFFSAAIKLPAGISSGVVVAFYLSNSEKFPHSHDEIDIELLKRNDWVIQTNVYANGSTSTGREEKFYFWFDPTQQYHYYSILWNSYHTVFLVDNIPVREFIHSNAYPYVYPSKAMSVYATIWDGSEWATHGGKYGVNYNYAPFVVSFSEMELSGCISDPTGSGSCSKASTSGTDPVNGPEFTKLSQQQVSAMDWARRKLMFYSYCNDKNRFKVMPPECN* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g0546 310 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 273 309 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Aev03g0546 310 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 2 310 IPR044791 GO:0004553
Aev03g0546 310 Gene3D - 34 309 - -
Aev03g0546 310 PIRSF EndGlu_transf 13 310 IPR016455 GO:0010411|GO:0016762|GO:0042546
Aev03g0546 310 SUPERFAMILY Concanavalin A-like lectins/glucanases 51 309 IPR013320 -
Aev03g0546 310 Pfam Glycosyl hydrolases family 16 66 230 IPR000757 GO:0004553|GO:0005975
Aev03g0546 310 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 42 238 IPR000757 GO:0004553|GO:0005975
Aev03g0546 310 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 33-RELATED 2 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g0546 Aev-Chr3 4001289 4002949 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g0546 3 310 Glycoside Hydrolase AT1G10550 62.658 1.68e-141 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g0546 K08235 - gmx:100778993 499.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev03g0546 03 4001289 4002949 Aev03g0546 03 4001289 4002949 ECH