LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aev03g0543	ATGGCTCGGGTTTATATTGGGAACTTGGATCCTCGTGTCAGTGAGAGGGATCTCGAAGATGAATTTCGTTTGTACGGAGTTCTCAGGAGTGTCTGGGTGGCTCGTAGACCACCAGGATATGCTTTTATTGAGTTTGATGATAGGAGGGATGCACTAGATGCAATTCATGCCTTGGATGGAAAAAATGGGTGGCGTGTAGAGCTTTCTCATAATTCCAAGGGTAGTGGGGGGCGTAGTGGGCGTGGAGGTGATGACCTGAAATGCTATGAATGTGGGGAACCTGGGCATTTTGCTCGTGAGTGTCGCTTACGTGTTGGTTCACGAGGGGTAGGAAGTGGAAGGAGGCGAAGTCCTAGTCCATATCGACGTCGTAGAAGTCCAATTTATGGGAGTTATAGCCCTCGTGGGAGAAGATCTCGACGCAGCATATCACCTCCTCATCGTGGTCGCAGCTACAGTAGGTCTCCTCCATACCGTCAGTCTCGCCGTGATTCCCCTTATGCCAATGGAGATTAA	516	0.5	MARVYIGNLDPRVSERDLEDEFRLYGVLRSVWVARRPPGYAFIEFDDRRDALDAIHALDGKNGWRVELSHNSKGSGGRSGRGGDDLKCYECGEPGHFARECRLRVGSRGVGSGRRRSPSPYRRRRSPIYGSYSPRGRRSRRSISPPHRGRSYSRSPPYRQSRRDSPYANGD*	172

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aev03g0543	171	Gene3D	-	2	69	IPR012677	-
	Aev03g0543	171	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	4	61	IPR000504	GO:0003723
	Aev03g0543	171	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	2	73	IPR000504	GO:0003723
	Aev03g0543	171	MobiDBLite	consensus disorder prediction	148	162	-	-
	Aev03g0543	171	Gene3D	-	76	129	-	-
	Aev03g0543	171	PANTHER	SERINE/ARGININE-RICH SPLICING FACTOR RSZ21	2	169	-	-
	Aev03g0543	171	SMART	c2hcfinal6	87	103	IPR001878	GO:0003676\|GO:0008270
	Aev03g0543	171	PANTHER	SERINE/ARGININE RICH SPLICING FACTOR	2	169	-	-
	Aev03g0543	171	Pfam	Zinc knuckle	87	102	IPR001878	GO:0003676\|GO:0008270
	Aev03g0543	171	ProSiteProfiles	Zinc finger CCHC-type profile.	87	102	IPR001878	GO:0003676\|GO:0008270
	Aev03g0543	171	SUPERFAMILY	Retrovirus zinc finger-like domains	79	104	IPR036875	GO:0003676\|GO:0008270
	Aev03g0543	171	CDD	RRM_SRSF3_like	3	71	-	-
	Aev03g0543	171	SUPERFAMILY	RNA-binding domain, RBD	3	82	IPR035979	GO:0003676
	Aev03g0543	171	MobiDBLite	consensus disorder prediction	107	171	-	-
	Aev03g0543	171	SMART	rrm1_1	3	69	IPR000504	GO:0003723

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aev03g0543	Aev-Chr3	3976269	3977797	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aev03g0543	K12896		-	rcu:8262005	198.364

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aev03g0543	03	3976269	3977797	Aev03g0543	03	3976269	3977797	ECH