Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g0456 ATGACTTTTTGGAGAAAGAATCATGGAAATTTGCGAAGTTCTGCGAACAGACAACGCACAGACAACGCACGGCCGCCCAGGCGGTCAGAAATCGCCCCAGCGGCAGCCGCCGTCAACCAGGCCGCCCCAGCGGTGGCAGACCGCCCCGGCGGTGGTGCAGCCGCCCCAGCGGCCAAGACCGCCCCAGCGGTGGTCGCACCGCCCCGGCCCGTTTTTCGCGCTGTGGTGAGGATGTCGACTCCTGCAAGGAAGAGACTGATGAGAGATTTTAAGAGATTGCAACAAGACCCTCCTGCTGGCATCAGTGGGGCTCCACAAGACAATAACATTATGCTTTGGAATGCTGTTATATTTGGACCGGATGACACTCCCTGGGATGGAGGTACGTTTAAGTTGACACTTCAATTTACAGAAGATTATCCTAATAAACCTCCTACAGTGCGCTTTGTATCTCGAATGTTTCATCCAAACATTTATGCGGATGGAAGTATATGCTTGGACATCTTACAAAATCAGTGGAGCCCAATTTATGATGTAGCTGCGATTCTTACCTCAATCCAGTCATTGCTGTGTGACCCAAACCCAAATTCTCCAGCAAATTCTGAAGCTGCTCGGATGTTCAGCGAAAACAAGCGTGAATACAACAGAAGAGTACGCGAGATTGTTGAGCAGAGTTGGACTGCTGATTAA 690 0.5087 MTFWRKNHGNLRSSANRQRTDNARPPRRSEIAPAAAAVNQAAPAVADRPGGGAAAPAAKTAPAVVAPPRPVFRAVVRMSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g0456 229 Pfam Ubiquitin-conjugating enzyme 85 221 IPR000608 -
Aev03g0456 229 CDD UBCc 84 222 IPR000608 -
Aev03g0456 229 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 154 169 IPR023313 -
Aev03g0456 229 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 68 229 - -
Aev03g0456 229 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 68 229 - -
Aev03g0456 229 MobiDBLite consensus disorder prediction 1 20 - -
Aev03g0456 229 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 81 227 IPR000608 -
Aev03g0456 229 SMART ubc_7 84 227 - -
Aev03g0456 229 SUPERFAMILY UBC-like 74 227 IPR016135 -
Aev03g0456 229 MobiDBLite consensus disorder prediction 1 61 - -
Aev03g0456 229 Gene3D Ubiquitin Conjugating Enzyme 76 225 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g0456 Aev-Chr3 3330814 3336092 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g0456 84 197 Miscellaneous Gene Families AT1G17280 31.092 2.40e-15 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g0456 K10573 - ncol:116259369 320.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev03g0456 03 3330814 3336092 Aev03g0456 03 3330814 3336092 ECH
Aev03g0456 03 3330814 3336092 Aev01g2101 01 25509514 25511392 PCT