Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g0210 ATGGCACAAGCACAACCTGAGGAGAAGATGGTTCATGAGAATTCAGAAAAGGGTAACCAAGAAACTGCAAATTCAGGCTTCAAATTCAATGCGCAAGCACCTGAATTTGTGCCGAGATCGCACACCCAGATGCCAATCTCGGGCTATTTCTACCCTTGCCTCCAGATTCTTGGTGGGTCTGCTGATTCTGATTGGTTCTACATTGGGGACCATGACCCTACTACTGCCTGTTTGATTCCAGCTACCAATGTTGCTTTACCCAATTGCTCCAACAAGAATGTCCTCACCTCTGATCTCCAGAAAAAGATCATCAAACAGGTGGAGTATCAGTTCAGTGACATGAGCTTGCTGGCAAATGAATCTTTTCAGAAACAGGTGAATAAAGATCCTGAAGGTTATGTTCCATTAACCCTTATTGCTTCCACCAAAAAGGTCAAGTCCCTCACTAACAACGTTCAATTGATTTCCCAAGCTCTACGTTCATCCTCAAAACTTGTTTTGACTGCTGATGGCAAGAAGGTTAAACGTAAACATCCATTCACTGAAAAGGATAAAGAGGAATTGCAGTCTCGTACTGTTGTGGTAGAGAATTTACCTGATGATCATTCCCATCAAAATCTTCAGAAGATATTTTCTGTAGTTGGAAGCGTGAAAACAATCAGAATATGCCATCCCCCAGAATCTAATTCTTCACGCCCAAAAAGTGATTTCTTCATCAGCAACAAGCTCCATGCACTTGTGGAGTATGAGTCACCAGATATAGCTGAGAAAGCTGTGGAGAAGTTAAGCGACGAAAGGAACTGGAGGAAAGGGATGCGAGTAAGAGTGCTGCTTAGATGCTCGCCGAAATCTGTTTTGAAAGGTAGAAAGTCCGATTTTGATGGCTATCTTGATGACGATGAAAACCTAAATTCTGATTCTGCTGAGGATTCCTCTCATCTAAACAACACTGAATTGACTATAGACACTAATGTTGACGAAAATTCAGTAGGATCGAAGAAAGGATGGGCTAGAGGTCGTGGAAAGGGAAGAGGACGAACTCAAAGCCATGCTGGACGCGGCCTGCTCGCACCGCCATCCCAACCGAGCGGCATTGTCCCATGCGAAGCATCTGCTAAATCCAACAGCAAGGGACCGAGAATGCCAGATGGGACAAGAGGTTTCGCAATGGGACGAGGCAAGCCAATTATCTCCTCTGCCTCTCAGTCTCTAGCCACTTCACCTCAAGAGTGA 1233 0.4469 MAQAQPEEKMVHENSEKGNQETANSGFKFNAQAPEFVPRSHTQMPISGYFYPCLQILGGSADSDWFYIGDHDPTTACLIPATNVALPNCSNKNVLTSDLQKKIIKQVEYQFSDMSLLANESFQKQVNKDPEGYVPLTLIASTKKVKSLTNNVQLISQALRSSSKLVLTADGKKVKRKHPFTEKDKEELQSRTVVVENLPDDHSHQNLQKIFSVVGSVKTIRICHPPESNSSRPKSDFFISNKLHALVEYESPDIAEKAVEKLSDERNWRKGMRVRVLLRCSPKSVLKGRKSDFDGYLDDDENLNSDSAEDSSHLNNTELTIDTNVDENSVGSKKGWARGRGKGRGRTQSHAGRGLLAPPSQPSGIVPCEASAKSNSKGPRMPDGTRGFAMGRGKPIISSASQSLATSPQE* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g0210 410 CDD RRM_La_like_plant 191 278 IPR034878 GO:0003723
Aev03g0210 410 Gene3D - 96 181 IPR036388 -
Aev03g0210 410 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 263 IPR000504 GO:0003723
Aev03g0210 410 PRINTS Lupus La protein signature 132 147 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Aev03g0210 410 PRINTS Lupus La protein signature 106 123 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Aev03g0210 410 PRINTS Lupus La protein signature 163 176 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Aev03g0210 410 PRINTS Lupus La protein signature 185 201 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Aev03g0210 410 MobiDBLite consensus disorder prediction 308 330 - -
Aev03g0210 410 MobiDBLite consensus disorder prediction 1 23 - -
Aev03g0210 410 Pfam La domain 103 160 IPR006630 -
Aev03g0210 410 Pfam Ataxin-2 C-terminal region 27 41 IPR009818 -
Aev03g0210 410 Gene3D - 182 278 IPR012677 -
Aev03g0210 410 PANTHER LUPUS LA PROTEIN-RELATED 9 398 IPR045180 -
Aev03g0210 410 SUPERFAMILY RNA-binding domain, RBD 177 276 IPR035979 GO:0003676
Aev03g0210 410 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 276 IPR000504 GO:0003723
Aev03g0210 410 ProSiteProfiles La-type HTH domain profile. 93 184 IPR006630 -
Aev03g0210 410 SMART la 97 177 IPR006630 -
Aev03g0210 410 SMART rrm1_1 192 277 IPR000504 GO:0003723
Aev03g0210 410 MobiDBLite consensus disorder prediction 302 410 - -
Aev03g0210 410 PANTHER LA-RELATED PROTEIN 6C 9 398 - -
Aev03g0210 410 SUPERFAMILY "Winged helix" DNA-binding domain 95 180 IPR036390 -
Aev03g0210 410 MobiDBLite consensus disorder prediction 396 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g0210 Aev-Chr3 1644801 1647496 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g0210 K15191 - gmx:100796786 609.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev03g0210 03 1644801 1647496 Aev03g0210 03 1644801 1647496 ECH