Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g2139 ATGGTTCCCGCGAGTGGCAACAACAATAGAGCAATTCAGCAGCACGTGTTCTCCCTTTTGCAACGCTGCATCAGCGTAAAGAATCTTGTTCAAATCCACGCCCAAATTGTCATCAACGCCCTCTCCCACAAGAACAACGTCATCGCCAAGCTTCTATCTTTCTACGTATCCTACGCTCACTTCCAGCATGCCCACAATCTCTTCTCCAAGATTCAAAACCCAAACACCACCCTTTGGAACCAGATTATCAGAGGCCATGCCCGGAGCCAAACGCCACGGAAATCGGTGGAGTGTTTCAACCAGATGGTGTTTTCTGGGGTTGAGCCTGATGGGTTCACCTACTCGTTCCTTCTGAGCGCGTGCGCGCGTGGTGGGTTGTTGAGAGAAGGGGAACAAGTGCATGCTGCGGTTTTGGTTAAAGGGTATTGCTCCAATGTGTTCGTGGACACGAATTTGGTTAACTTCTATTGTGTTTGTGGTGGTGTTGGGAAAGCACGCCATGTGTTTGATGAAATGGGTGAGAGGAGTGTTGTGAGTTGGAACTCTTTGCTTGCTGGGTATGTTAGGTGTGGTGATTTTGATGGTGCAAGGAGGGTTTTTGATGAGATGCCATGTAGGAATATTGTGTCTTGGACGACCATGGTTTCCGGGTATGCTCGAGGTGGGAAGTGCAAGCAGGCTTTGTCATTGTTTGGTGAGATGAGGAGGGCTCGTGTGGAATTGGATCAGGTGGCATTGGTGGCTGCTTTGTCAGCTTGTGCTGAATTGGGGGATTTGAAATTGGGAAGATGGATACATTGGTATGTTCAGCAGAGATTCGTTGCGAGGAACAAGGAGCAACCCTCGGTGCGCCTGAGCAATGCGCTCATACACATGTATGCCAGTTGTGGAATCATTGATGAAGCTTATAAAGTGTTTGTTAAGATTCCTCGGAAAAACACCGTGTCTTGGACTAGCATCATCATGGCTTTTGCAAAACAAGGGTTTGGGAAGGAAGCACTTGATCTGTTTAAGACTATGCTTAGTGATGGTGTGGGAGTAAATGAAGTAAGACCTGATGAAGTAACTTTCATTGGAGTTCTTTGTGCTTGCAGCCATGCAGGACTCGTAGACGAAGGACGCCAGATTTTTGCGTCTATGAAACAAACGTGGGGAATCAGCCCGAGGATCGAGCACTATGGGTGCATGGTTGATCTCTTGAGCCGTGCTGGTTTCTTAGATGAAGCATGTGGACTTATTGAAACTATGCCTTTAAAGCCAAATGATGCATTGTGGGGTGCCCTTCTTGGAGGTTGTCGAATACACAAGAACTCAGAGCTAGCATCACGAGTAGCAAACGAGTTAGTAGCTGAGCTCAACACTGATCGAGCAGCCGGCTATCTCGTGCTCTTGTCGAACATTTATGCTTTTGCCAAAAGGTGGCAGGATGTCATTGCTGTGAGACAGAAAATGATAGGGATAGGTGTTAAAAAGCCGCCAGGCCGAAGTTGTGTTCAAATTAATGGAGTTCTCCATAATTTTGTGGTGGGTGACATGACTCATAAGCATTCATCTTTTATATATGAAACCCTTGATGAGATCACCAAGCAAGCCCTTAGGGAAGGCTATGAACCAGACTTAACAGAAGATTTTGAGGCATAA 1641 0.4674 MVPASGNNNRAIQQHVFSLLQRCISVKNLVQIHAQIVINALSHKNNVIAKLLSFYVSYAHFQHAHNLFSKIQNPNTTLWNQIIRGHARSQTPRKSVECFNQMVFSGVEPDGFTYSFLLSACARGGLLREGEQVHAAVLVKGYCSNVFVDTNLVNFYCVCGGVGKARHVFDEMGERSVVSWNSLLAGYVRCGDFDGARRVFDEMPCRNIVSWTTMVSGYARGGKCKQALSLFGEMRRARVELDQVALVAALSACAELGDLKLGRWIHWYVQQRFVARNKEQPSVRLSNALIHMYASCGIIDEAYKVFVKIPRKNTVSWTSIIMAFAKQGFGKEALDLFKTMLSDGVGVNEVRPDEVTFIGVLCACSHAGLVDEGRQIFASMKQTWGISPRIEHYGCMVDLLSRAGFLDEACGLIETMPLKPNDALWGALLGGCRIHKNSELASRVANELVAELNTDRAAGYLVLLSNIYAFAKRWQDVIAVRQKMIGIGVKKPPGRSCVQINGVLHNFVVGDMTHKHSSFIYETLDEITKQALREGYEPDLTEDFEA* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g2139 546 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 7 525 - -
Aev01g2139 546 PANTHER OS09G0411600 PROTEIN 7 525 - -
Aev01g2139 546 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 75 109 IPR002885 -
Aev01g2139 546 Pfam E motif 435 499 IPR046848 -
Aev01g2139 546 TIGRFAM PPR: pentatricopeptide repeat domain 355 388 IPR002885 -
Aev01g2139 546 TIGRFAM PPR: pentatricopeptide repeat domain 178 209 IPR002885 -
Aev01g2139 546 TIGRFAM PPR: pentatricopeptide repeat domain 79 110 IPR002885 -
Aev01g2139 546 TIGRFAM PPR: pentatricopeptide repeat domain 315 348 IPR002885 -
Aev01g2139 546 TIGRFAM PPR: pentatricopeptide repeat domain 209 242 IPR002885 -
Aev01g2139 546 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 110 144 IPR002885 -
Aev01g2139 546 Pfam PPR repeat 355 381 IPR002885 -
Aev01g2139 546 Pfam PPR repeat 392 416 IPR002885 -
Aev01g2139 546 Pfam PPR repeat 150 176 IPR002885 -
Aev01g2139 546 Pfam PPR repeat 315 345 IPR002885 -
Aev01g2139 546 Pfam PPR repeat 287 313 IPR002885 -
Aev01g2139 546 Pfam PPR repeat 178 208 IPR002885 -
Aev01g2139 546 Pfam PPR repeat 209 238 IPR002885 -
Aev01g2139 546 Gene3D Tetratricopeptide repeat domain 277 348 IPR011990 GO:0005515
Aev01g2139 546 Gene3D Tetratricopeptide repeat domain 162 276 IPR011990 GO:0005515
Aev01g2139 546 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 176 210 IPR002885 -
Aev01g2139 546 Gene3D Tetratricopeptide repeat domain 21 159 IPR011990 GO:0005515
Aev01g2139 546 Gene3D Tetratricopeptide repeat domain 349 505 IPR011990 GO:0005515
Aev01g2139 546 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 313 347 IPR002885 -
Aev01g2139 546 Pfam PPR repeat family 74 123 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g2139 Aev-Chr1 25758565 25760205 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev01g2139 61 539 Glycoside Hydrolase AT3G49170 31.703 2.45e-86 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g2139 - - aip:107610465 911.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev01g2139 01 25758565 25760205 Aev01g2139 01 25758565 25760205 ECH