Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g1988 ATGCTTTGTGTTGGTGAGATTGAAAAGCAGAGCAAGCAATATCCATCCATGAAGGCAACACTACGGTACTTAGCAGGAATGGCTGGGCCGAGTGGTTTTGGCTCAAACTCAACTGCAGAACAAGTTACTCAAGATTCCTGTTTCTCTTCTTCCAATCTCACTGCTCTCATCACTGGAGGGTCATCTGGAATTGGAGCTGAAACAGCAAGGGTGCTAGCAAAGAGAGGAATCAGAGTTGTGATTGCAGCAAGGGACATGAAGAAGGCAAAAGATGTAATCGACAATATCCAAAAGGAGTGTCCAAATGCTGAGCTTATTCTTTTGGAGATTGATCTCAGCTCTTTTGCTTCTGTACAGAGATTTTGTTCTGAGTTTTTAGCTTTAGAACTGCCCCTCAATATTCTCATAAACAATGCAGGAGTGTTCTCTCCAACTCTGGAGTTCTCTGAAGATAAATTTGAAATGACATTTGCTACAAATTACTTAGGACATTTTTTGCTAACGAAAATGCTACTAGAGAAATTGATAGATACAGCAAATAAGACAGGAATCCAAGGAAGAATAATAAACGTTTCTTCGGTTATCCATGGATGGGTGAACAGAAGTTGTTTTCGTTTCAATGACTTGCTCACAGGAAAAAATTATAATGGGACACGCGCATATGCTCAGTCAAAATTGGCCAATATTCTGCATGTGAAGGAAATTGCTAGACAGCTGAAGGCAAGGAATGCTAGAGTAACTATCAATGCTGTTCATCCAGGCATTGTAAAGACTGGAATAATTAGAGCTCATAAGGGCTTAATAACGGATTCCCTGTTTTTCATTGCATCAAAGTTACTCAAAACAATATCACAGGGTGCAGCAACAACGTGCTATGTTGCTCTGAGTCCACAAACAGAAGGAGTGAGTGGGAAATACTTTACAGATTGTAACGAGGGTAAGTGCTCGAGCTTAGCAGATGACGAATCGGAAGCTCGAAAGCTATGGAACAACACTCATGCCTTGCTTCATAAACGACTAAGTCAAGCAGCAACCTGA 1038 0.4094 MLCVGEIEKQSKQYPSMKATLRYLAGMAGPSGFGSNSTAEQVTQDSCFSSSNLTALITGGSSGIGAETARVLAKRGIRVVIAARDMKKAKDVIDNIQKECPNAELILLEIDLSSFASVQRFCSEFLALELPLNILINNAGVFSPTLEFSEDKFEMTFATNYLGHFLLTKMLLEKLIDTANKTGIQGRIINVSSVIHGWVNRSCFRFNDLLTGKNYNGTRAYAQSKLANILHVKEIARQLKARNARVTINAVHPGIVKTGIIRAHKGLITDSLFFIASKLLKTISQGAATTCYVALSPQTEGVSGKYFTDCNEGKCSSLADDESEARKLWNNTHALLHKRLSQAAT* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g1988 345 Coils Coil 79 99 - -
Aev01g1988 345 Gene3D - 38 341 - -
Aev01g1988 345 PRINTS Glucose/ribitol dehydrogenase family signature 130 141 IPR002347 -
Aev01g1988 345 PRINTS Glucose/ribitol dehydrogenase family signature 244 261 IPR002347 -
Aev01g1988 345 PRINTS Glucose/ribitol dehydrogenase family signature 54 71 IPR002347 -
Aev01g1988 345 PRINTS Glucose/ribitol dehydrogenase family signature 221 240 IPR002347 -
Aev01g1988 345 PRINTS Glucose/ribitol dehydrogenase family signature 180 196 IPR002347 -
Aev01g1988 345 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 51 312 IPR036291 -
Aev01g1988 345 CDD retinol-DH_like_SDR_c_like 54 329 - -
Aev01g1988 345 PANTHER RETINOL DEHYDROGENASE 20 341 - -
Aev01g1988 345 Pfam short chain dehydrogenase 54 195 IPR002347 -
Aev01g1988 345 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 186 194 IPR002347 -
Aev01g1988 345 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 130 141 IPR002347 -
Aev01g1988 345 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 221 240 IPR002347 -
Aev01g1988 345 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 20 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g1988 Aev-Chr1 24630929 24634843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev01g1988 54 260 Acyl Lipid Metabolism Gene Families AT1G63380 30.660 1.57e-14 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g1988 - - gmx:100776567 553.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev01g1988 01 24630929 24634843 Aev01g1988 01 24630929 24634843 ECH
Aev01g1988 01 24630929 24634843 Aev08g2281 08 22021960 22027173 PCT