Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g1948 ATGAATGGCTCTGTTAGCCTCAACCACCAGTGCGTGACCTCGCTCAAGACCCTAACCCCACACATCACGTGCCTCGCAGTCCACCGTAACCTTCTCTACGCCGCATCCATCAACCTCATCAACGTCTTCGATCTCTCCCACCATTACTACACCCACCTCGACGCCTTCAACCACAACAACCCTTCCTCCGGCTTCGTCAAATCCATCGCCTTCACCTCCTCAAGAGTCTTCACCGCCCACCAAGACCGCAAGATCCGAATCTGGCTAATCACCCCTTCAAAACGACACCGTCTCCTCTCCTCTCTCCCAACCCTCAAGGACCGCATTCGCCGCTGCATCCTACCCACAAATTACGTCAGCGTCAGGCGCCACCGTACGAGCCTCTGGATCCAGCACTGCGACACCGTTTCCGGCTTAGCGGTTACTAATAATCAAGGCCTCATGTACTCTGTTTCGTGGGATAAGACTATTAAGATTTGGGATTTAACAACGGATTACCGGTGTTTGGAGTCCGTTAAGGCCCATGACGACGCGATTAATGCGGTTGTTGTTGCGGTTGATGGAACCGTTTACACGGCGTCAGCTGATGGGTGTATTAAGGTCTGGGAGAGGGATGATAAGGTGAAACGGCACGTGTTGGTGAGTACCGTGGGGAAGCAGAGATCGGCGGTTAATGCGCTTGCAATATTGGACGGAGATGGTGCGGCGTTGTTCTCTGGAGGGTGTGATGGGACGATATGCCGTTGGGAGAGGAAGTGCGGGGGAAACGACGTCGTTTTGGTGGAGACGTTGAGGGGTCATGGTGGGGCCATATTGTGTATGATTGGCGTGAGGGGTTTGTTGGCGAGTGGGTCAGCGGATCAGACGGTCAGGATTTGGCAGAGGGAAAAGGGGAGTAGTGATAGTAGTAGTGGGTACTGTTGCAGAGTAGTCTTGGAAGGGCACGAGAAACCGGTAAAGTCGTTGGTGGCGTTGTTTGAAGGAGGGGATGATAATGATTCAAACGGCGTCGTTACGATCTGTAGTGGAAGCCTTGACGGGGATATTAGAGTGTGGGAGGTGTTTGAGCGTGAAAAAGTCGAAGCCATCGATGCCCAGGACTCCGAGGCAGGAGCTGGATCATCCAAGAAGAATCGGCCAACTTCCGCTAATGGCAATGCACTAAAGCTTACTTGTGAACTTGTCCGGGTTTTCGTCACAGAGTCTATTCAGCGTGCTGCTGCTGTTGCAGAAGCAGAGGGTGTTACTTTAATAGAAGCTTCTCATTTGGAGACCATTCTTCCTCAGTTACTTTTAGATTTCTAA 1305 0.5203 MNGSVSLNHQCVTSLKTLTPHITCLAVHRNLLYAASINLINVFDLSHHYYTHLDAFNHNNPSSGFVKSIAFTSSRVFTAHQDRKIRIWLITPSKRHRLLSSLPTLKDRIRRCILPTNYVSVRRHRTSLWIQHCDTVSGLAVTNNQGLMYSVSWDKTIKIWDLTTDYRCLESVKAHDDAINAVVVAVDGTVYTASADGCIKVWERDDKVKRHVLVSTVGKQRSAVNALAILDGDGAALFSGGCDGTICRWERKCGGNDVVLVETLRGHGGAILCMIGVRGLLASGSADQTVRIWQREKGSSDSSSGYCCRVVLEGHEKPVKSLVALFEGGDDNDSNGVVTICSGSLDGDIRVWEVFEREKVEAIDAQDSEAGAGSSKKNRPTSANGNALKLTCELVRVFVTESIQRAAAVAEAEGVTLIEASHLETILPQLLLDF* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g1948 434 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 129 164 - -
Aev01g1948 434 ProSiteProfiles Trp-Asp (WD) repeats profile. 129 164 IPR001680 GO:0005515
Aev01g1948 434 Pfam CENP-S associating Centromere protein X 377 434 IPR018552 GO:0006281|GO:0051382
Aev01g1948 434 Gene3D - 5 108 IPR015943 GO:0005515
Aev01g1948 434 Gene3D - 109 383 IPR015943 GO:0005515
Aev01g1948 434 PRINTS G protein beta WD-40 repeat signature 281 295 IPR020472 -
Aev01g1948 434 PRINTS G protein beta WD-40 repeat signature 148 162 IPR020472 -
Aev01g1948 434 PRINTS G protein beta WD-40 repeat signature 340 354 IPR020472 -
Aev01g1948 434 ProSiteProfiles Trp-Asp (WD) repeats profile. 264 303 IPR001680 GO:0005515
Aev01g1948 434 PANTHER TRANSDUCIN/WD40 REPEAT PROTEIN 8 354 - -
Aev01g1948 434 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 8 354 IPR045182 -
Aev01g1948 434 SUPERFAMILY WD40 repeat-like 8 364 IPR036322 GO:0005515
Aev01g1948 434 SMART WD40_4 165 203 IPR001680 GO:0005515
Aev01g1948 434 SMART WD40_4 123 161 IPR001680 GO:0005515
Aev01g1948 434 SMART WD40_4 8 44 IPR001680 GO:0005515
Aev01g1948 434 SMART WD40_4 49 89 IPR001680 GO:0005515
Aev01g1948 434 SMART WD40_4 305 353 IPR001680 GO:0005515
Aev01g1948 434 SMART WD40_4 210 250 IPR001680 GO:0005515
Aev01g1948 434 SMART WD40_4 257 294 IPR001680 GO:0005515
Aev01g1948 434 ProSitePatterns Trp-Asp (WD) repeats signature. 148 162 IPR019775 -
Aev01g1948 434 Pfam WD domain, G-beta repeat 131 161 IPR001680 GO:0005515
Aev01g1948 434 Pfam WD domain, G-beta repeat 261 293 IPR001680 GO:0005515
Aev01g1948 434 Pfam WD domain, G-beta repeat 167 202 IPR001680 GO:0005515
Aev01g1948 434 Pfam WD domain, G-beta repeat 308 352 IPR001680 GO:0005515
Aev01g1948 434 Gene3D - 393 434 - -
Aev01g1948 434 ProSiteProfiles Trp-Asp (WD) repeats profile. 172 203 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g1948 Aev-Chr1 24355060 24360927 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev01g1948 76 369 Acyl Lipid Metabolism Gene Families AT3G18860 27.554 7.33e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g1948 - - aprc:113874855 542.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev01g1948 01 24355060 24360927 Aev01g1948 01 24355060 24360927 ECH