Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g1828 ATGGCTTCCTCAATCTCAAGCTCTTCTTCAAGGTTGTTCACCATTCCAAGAGAGTCACACCCCACTTCTCATTTTACTTCAAAAGACCCTTCTGTTCTGAAAATGGAGGAAGAACCAAAGGTCTCTAATGGGTCGGTGCTTTTTCAGAGACCAGATTCATTTGGGAGGTTTGGGAAGTTTGGTGGGAAATATGTCCCTGAGACTCTTATGCATGCCCTCACTGAGCTTGAGGCTGCATTCCATTCCCTTTCTGCTGATGAAGATTTTCAGAGGGAGCTGGCTGGCATTCTAAAAGACTATGTCGGTCGGGAGAGTCCTCTTTACTTTGCAGAAAGGTTGACGGAGCATTACAAGAGGCCTAATGGCGAAGGGCCTCACATTTACCTGAAGAGGGAAGATCTTAATCACACTGGGGCTCACAAGATCAACAATGCTGTTGCACAAGCTTTACTTGCGAAGAGTTTGGGCAAAAAACGCATTATCGCTGAAACTGGAGCTGGTCAGCATGGAGTTGCAACTGCTACTGTATGCGCTCGATTTGATTTAGAGTGCATTATTTATATGGGTGCGCAGGATATGGAAAGGCAAGCACTCAATGTTTTCAGAATGCGTCTTCTTGGTGCTGAGGTGAGACCAGTGCATTCTGGGACTGCTACACTCAAGGATGCAACATCTGAGGCTATAAGGGACTGGGTGACTAATGTTGAAACAACTCATTATATTTTGGGTTCTGTTGCTGGACCGCATCCATATCCGATGATGGTAAGGGAGTTCCATGCTGTGATTGGCAAGGAAACCCGAAAGCAAGCCTTGGAAAAATGGGGAGGGAAACCGGATGTTCTGATTGCATGTATCGGAGGAGGTTCAAATGCCATGGGACTTTTCCATGAATTCGTTGATGACAAAGATGTTAGGCTGATTGGTGTGGAGGCTGCTGGATTTGGGCTTGACAGTGGCAAGCATGCTGCAACGTTGACAAAGGGAGAAGTCGGGGTTCTGCATGGAGCTATGAGCTATCTGCTGCAGGATGATGATGGTCAAATTGTTGAGCCTCACTCGATAAGTGCAGGCTTGGACTACCCTGGTGTAGGACCTGAACACAGCTTTTTGAAAGATATGGGGCGTGCTGAATATTATAGCATCACTGATGAAGAAGCACTTGAAGCTTTCAAGAGAGTTTCGCGTCTCGAAGGCATTATTCCGGCCCTCGAGACATCTCATGCACTGGCCTATCTGGAGAAAGTGTGTCCAACCCTTGCAGATGGAACCAAAGTTGTGGTTAACTTCAGTGGCAGAGGTGACAAGGATGTTCAAACTGCCATCAAGTACTTGAAGGTTTGA 1341 0.4668 MASSISSSSSRLFTIPRESHPTSHFTSKDPSVLKMEEEPKVSNGSVLFQRPDSFGRFGKFGGKYVPETLMHALTELEAAFHSLSADEDFQRELAGILKDYVGRESPLYFAERLTEHYKRPNGEGPHIYLKREDLNHTGAHKINNAVAQALLAKSLGKKRIIAETGAGQHGVATATVCARFDLECIIYMGAQDMERQALNVFRMRLLGAEVRPVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVREFHAVIGKETRKQALEKWGGKPDVLIACIGGGSNAMGLFHEFVDDKDVRLIGVEAAGFGLDSGKHAATLTKGEVGVLHGAMSYLLQDDDGQIVEPHSISAGLDYPGVGPEHSFLKDMGRAEYYSITDEEALEAFKRVSRLEGIIPALETSHALAYLEKVCPTLADGTKVVVNFSGRGDKDVQTAIKYLKV* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g1828 446 CDD Trp-synth_B 72 439 IPR006654 GO:0004834|GO:0006568
Aev01g1828 446 Hamap Tryptophan synthase beta chain [trpB]. 50 444 IPR023026 GO:0000162|GO:0004834
Aev01g1828 446 Pfam Pyridoxal-phosphate dependent enzyme 101 431 IPR001926 -
Aev01g1828 446 TIGRFAM trpB: tryptophan synthase, beta subunit 55 443 IPR006654 GO:0004834|GO:0006568
Aev01g1828 446 ProSitePatterns Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 134 148 IPR006653 GO:0004834|GO:0006568
Aev01g1828 446 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 51 444 IPR036052 -
Aev01g1828 446 PANTHER TRYPTOPHAN SYNTHASE BETA CHAIN 1, CHLOROPLASTIC-RELATED 37 446 - -
Aev01g1828 446 Gene3D - 57 259 IPR036052 -
Aev01g1828 446 MobiDBLite consensus disorder prediction 1 32 - -
Aev01g1828 446 Gene3D - 102 437 IPR036052 -
Aev01g1828 446 PIRSF Trp_syn_beta 42 446 IPR023026 GO:0000162|GO:0004834
Aev01g1828 446 PANTHER TRYPTOPHAN SYNTHASE-RELATED 37 446 - -
Aev01g1828 446 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g1828 Aev-Chr1 23280521 23284098 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g1828 K01696 - gmx:100801288 803.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev01g1828 01 23280521 23284098 Aev01g1828 01 23280521 23284098 ECH