LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aev01g0791	ATGAGCATTGTCCCTAAGGAGACAATCGAAGTGATAGCACAGAGCATCGGCATCACCAATTTGTCCCCTGATGTTGCCCTCGCCCTTGTCCCCGATCTCGAGTATCGTATGCGAGAAGTCATGCAGGAGTCCATAAAATGCATGCGCCACTCAAAGAGAACTCTTCTTACTGCAGACGATGTAGATAGTGCACTTGCTTTGAGAAATTTAGAGCCAATTTATGGTTTCGCCTCGAATGATCCTCTGAGGTTCAAAAGAGCTGCTGGACACAAAGATTTGTTCTATGTTGATGACAAAGATGTGGATTTTAAAGATCTGATGGAAGCACCTTTACCAAAGGCACCTCTTGATACATCAATTAACAGTCATTGGCTGGCTATTGAAGGTGTACAACCTGCAATTCCTGAAAATGCTACAGTTGACGCTCCCTCTGATATAAGAAAATCTGAATATAAAGACGATGGGCTTCCTATTGATATTAAATTACCTGTTAAACATGTGATAACGAAGGAGCTTCAGCTTTACTTTGACAAAATAACTGAGCTTATTTTAAATAAGCCTGCCTCTATTCCCTTCAGAAGAGCATTAGTTAGTTTAGCAACGGACTCAGGACTCCATCCTTTGGTTCCCTATTTTGCACGCTTTGTAGCTGAGGAGGTGGGACAAAATTTGCATAATTTAACACTTCTATTTGCCTTGATGCGTCTTGTGAGGAGCCTTCTGCAAAATCCTCACATTCATGTAGAACTTTATTTACATCAATTGATGCCGCCTATCATTACCTGCACTGTTGCAAAAAAGATAGGAAATAGACCATCCGATGATCACTGGGATCTTAGGAACTTCAGTGCTAATCTTGTTGCATCTGTGTGCAAAAGATTTGGGCATATTTATCACAATCTTCAGCCACGGGTGACGAAGACATTTCTTCACGCATTTTTGGACCCCATGAATGCTCTGCCTCAACACTATGGTGCAATTAAAGGGATAGCCGCTCTTGGATCGAGATTGGTTCGCTTGCTTATACTTCCAAATCTCGAGCCATATTTGCATCTTCTTGAGTCAGAAATGCAATTTGAGAGTCAAAAGAATGAAACAAAGAGGCATGAAGCATGCCAAGTTTATGGGGCCTTGATGTGTGCAGTAGGCCAATGTTTGCATGAAAAGGCCAAAAAATTCACCAGTTTGCTCTCCCCTCCAACTCGTGTTACTTCAAGAGGCAATGGAAAAGCCATGATTGCAATACCAGGAAAACGTAAAGCCAGCACAGACAATCTAATGATGCAGCAGCAACCTCCACTGAAGAAAATTGCTACAGATGGCCCTGGTGGTGTGGTACCAATGAACTCCATGTCTGTTGACATGCAAGGTTCAACAGGTGGATTTTCCTCCATGATGGGGGTTCCTAACGTCGGCATGTCATTGACGGGTCGCCAACTTCCGAATGACAACACGCCAGGTAGAGACACTGGCGGTCAACAGTCGAAGGTATCGGCCTTTCTTGCTCAAGCATGGAAGGATGACATGGATGCAGGACATTTGGTGTCATCAGGGTTCGAATTATTTGGTGAAAGTGTGTTATGCTTTCTTCCAAAACCTGAAGCAGTAATATCAGATAAGGGTCTTGATTTTGCCAAGAACTTGCTGATAGAGCAAGGAATTGAGTCTGTTGTTCAGCTTCAGCTGCCAGAGATTGAGAAATCTGTGCAAGTCCCACTTGTTGGAAATGCCAAAGTGGTTCTCTCAGAGATCACAATCAAGGATGTTCAGATAAATTCTTCATCTGTTGAGACAGGAGACACTGGAATCTTTATAGTTGTGTCAGGTGCTACAGCCAATTTGAGCATGAAGTGGAGATATTCTTGTAGCAGTTGGTTGATTCCATTTGGGCTTTCAGATAGTGGAAATGCAACAGTCGAGGTTAATGGTATGCAAGTGGGGCTCACAGTAAATTTAAGCAACCAAGAAGGAACTCTTAAGTTGATTCTCTTAGATTATGGATGTTATGTGGGAGATTTATCTATAAAGTTGGAAGGTGGAGCATCTTGGCTTTACCAAGTGTTAGTGGATGCTTTTGAAGGTAATATAGCATCTGCAGTTGAAAAGGGCATTTCAGATAAAATAAGAGAAGGGATAGGGAAGCTTGACCAGTTATTGCAATCTCTTCCAAAGAAAATCCCTCTGGATAAAACTGCTGCACTAAATGTTTCTTTCATTGGAAATCCTGTGTTGAGTAATACTTCTGTTGCAGTAGCAATCAATGGTTTATTCACAATAAGAAGTGACCTTTTAGTGCCTAAAGGTTACCAAAAAGGATTACATGTTTCTTCTGCTTGTGGTGGTTTACCAAAGATGATAAAGGTTTCAATACATGAAAAAGTGTTCAAATCTGCTTCCCTAGTTTATTTCAATGCAGGTAGTATGCAATTGATTATGAACGAACTACCTGATCTGGTTTTGAACACTGCTGAGTGGAGATTCATAGTTCCTCAATTGTACAAGCAATATCCAAATGATGACATGCAGCTTAATATCTCTGTATCTTCTCCACCACTGATACAAGTGAACTCCCAAGATATTGGTGCATCCATTTCTGTAGATGTAACAATTGATGTTCTGGAAGCTGGTGAAGTCATACCAGTTGCATGCATCTCTGTGGATATTAGTGCTTCATGTGCTGTCGAAATTATAGGAAACAAAATCACTGGCAGGCTCAGATTGCAAAGGTTTTCTGCATACTTGAAATGGAGCAAGATAGGGAAATTGCGCATTCGTCTGGTTCAGTCATTGATCTCAACTGTCCTCAAAGTGGTCGTCGTCCCATACCTGAACTTGGAATTAAAGAGAGGATTAGCATGGCCAGTTATTGGTGGTTTTTCCTTTCAGAATGCTAATATATTATACTTTCATCCATGGATTTCTGTATGTACTGATGTTTCCTTCTTAGGAGACTACTATCTCAGTCAGCACTCAACTCATATATCATAA	2988	0.4123	MSIVPKETIEVIAQSIGITNLSPDVALALVPDLEYRMREVMQESIKCMRHSKRTLLTADDVDSALALRNLEPIYGFASNDPLRFKRAAGHKDLFYVDDKDVDFKDLMEAPLPKAPLDTSINSHWLAIEGVQPAIPENATVDAPSDIRKSEYKDDGLPIDIKLPVKHVITKELQLYFDKITELILNKPASIPFRRALVSLATDSGLHPLVPYFARFVAEEVGQNLHNLTLLFALMRLVRSLLQNPHIHVELYLHQLMPPIITCTVAKKIGNRPSDDHWDLRNFSANLVASVCKRFGHIYHNLQPRVTKTFLHAFLDPMNALPQHYGAIKGIAALGSRLVRLLILPNLEPYLHLLESEMQFESQKNETKRHEACQVYGALMCAVGQCLHEKAKKFTSLLSPPTRVTSRGNGKAMIAIPGKRKASTDNLMMQQQPPLKKIATDGPGGVVPMNSMSVDMQGSTGGFSSMMGVPNVGMSLTGRQLPNDNTPGRDTGGQQSKVSAFLAQAWKDDMDAGHLVSSGFELFGESVLCFLPKPEAVISDKGLDFAKNLLIEQGIESVVQLQLPEIEKSVQVPLVGNAKVVLSEITIKDVQINSSSVETGDTGIFIVVSGATANLSMKWRYSCSSWLIPFGLSDSGNATVEVNGMQVGLTVNLSNQEGTLKLILLDYGCYVGDLSIKLEGGASWLYQVLVDAFEGNIASAVEKGISDKIREGIGKLDQLLQSLPKKIPLDKTAALNVSFIGNPVLSNTSVAVAINGLFTIRSDLLVPKGYQKGLHVSSACGGLPKMIKVSIHEKVFKSASLVYFNAGSMQLIMNELPDLVLNTAEWRFIVPQLYKQYPNDDMQLNISVSSPPLIQVNSQDIGASISVDVTIDVLEAGEVIPVACISVDISASCAVEIIGNKITGRLRLQRFSAYLKWSKIGKLRIRLVQSLISTVLKVVVVPYLNLELKRGLAWPVIGGFSFQNANILYFHPWISVCTDVSFLGDYYLSQHSTHIS*	996

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aev01g0791	995	Pfam	LBP / BPI / CETP family, C-terminal domain	784	980	IPR001124	GO:0008289
	Aev01g0791	995	SUPERFAMILY	ARM repeat	221	384	IPR016024	-
	Aev01g0791	995	SUPERFAMILY	Bactericidal permeability-increasing protein, BPI	752	981	IPR017943	GO:0008289
	Aev01g0791	995	SMART	bpi2_2	780	977	IPR001124	GO:0008289
	Aev01g0791	995	Gene3D	-	535	966	-	-
	Aev01g0791	995	Gene3D	-	540	720	-	-
	Aev01g0791	995	Pfam	LBP / BPI / CETP family, N-terminal domain	541	714	IPR017942	GO:0008289
	Aev01g0791	995	SUPERFAMILY	Bactericidal permeability-increasing protein, BPI	536	746	IPR017943	GO:0008289
	Aev01g0791	995	Pfam	TAF6 C-terminal HEAT repeat domain	259	346	IPR011442	GO:0006367
	Aev01g0791	995	PANTHER	OS06G0309200 PROTEIN	535	995	IPR045897	-
	Aev01g0791	995	CDD	TAF6C	165	381	IPR011442	GO:0006367
	Aev01g0791	995	PANTHER	LBP/BPI/CETP FAMILY, CARBOXY-TERMINAL DOMAIN PROTEIN	535	995	-	-
	Aev01g0791	995	SMART	bpi1_3	537	762	IPR017942	GO:0008289
	Aev01g0791	995	Gene3D	-	164	369	IPR046344	GO:0006367
	Aev01g0791	995	SMART	TAF_cls	2	68	IPR004823	-
	Aev01g0791	995	Gene3D	Histone, subunit A	1	66	IPR009072	GO:0046982
	Aev01g0791	995	SUPERFAMILY	Histone-fold	1	65	IPR009072	GO:0046982
	Aev01g0791	995	Pfam	TATA box binding protein associated factor (TAF)	1	65	IPR004823	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aev01g0791	Aev-Chr1	7578563	7599874	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aev01g0791	K03131		-	gmx:100799998	848.58

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aev01g0791	01	7578563	7599874	Aev01g0791	01	7578563	7599874	ECH
	Aev01g0791	01	7578563	7599874	Aev07g0192	07	1084293	1086770	PCT