LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aev01g0469	ATGCTTTCCCAAACCTCCTACTCCTATATAAATAAGACCCTTCCCTCCACTTCCATTCCACAACAAAAAAAAGAAATCATTATTCATACAAAATCCATAAATCATAAATCCATGGCCACATTTATTAGAAATTTTGGTGCCTTTATTCCATTACTATTATTATTATGGCCTCTCTTATCAGCCATGTGTGTTTGGGGAAGACCAGCAACTTTTGTGCAAGACTTTCGAGTCACATGGGCTGAGTCCCATATTAGGCAAACTGATCAAGGCAGAACAGTTCAACTCATTCTAGACCGAAACTCTGGATGTGGGTTTGCTTCCAAGGTGAAGTACATGTTTGGTCGTGTTAGCATGAAGATCAAACTCATACCTGAAGACTCTGCTGGGACAGTCACAGCATTTTATATGAGTTCAGACACAGATTCTGTTCGTGATGAGCTAGATTTCGAGTTCTTGGGGAACCGTAGTGGACAACCTTACACGGTTCAAACAAACATCTATGCTCATGGGAAGGGTAATAGAGAACAAAGGGTCAACCTCTGGTTTGATCCTTCTGCCGATTACCACACCTACTCAATTCTGTGGAACCATCACCATATTGTGTTCTACGTGGACAACATTCCCATAAGAGTGTACAAGAACAACGAAGCAAAGGGAATCCCATACCCAAAAATGCAGCCAATGGGAGTGTATTCAACACTATGGGAAGCAGATAACTGGGCAACAAGGGGAGGCTTAGACAAAATCGATTGGAACAAAGCACCGTTCAATGCTTTCTACAAGGACTTCGACATCGAAGGTTGTCAAGGTTCTAACACCAATAACAATAACTGTGCCTCCAACCCTAATAATTGGTGGGAGGGTGCCTCCTACCAAGCTCTTAGTGCCATTGAAGCAAGAAGGTACAGGTGGGTTCGTATGAACCATTTAATCTATGACTATTGTCATGATAAGTCTAGGTTCATTCTCACCCCACCTGAATGCCTTGCTGCCATTTAA	999	0.4224	MLSQTSYSYINKTLPSTSIPQQKKEIIIHTKSINHKSMATFIRNFGAFIPLLLLLWPLLSAMCVWGRPATFVQDFRVTWAESHIRQTDQGRTVQLILDRNSGCGFASKVKYMFGRVSMKIKLIPEDSAGTVTAFYMSSDTDSVRDELDFEFLGNRSGQPYTVQTNIYAHGKGNREQRVNLWFDPSADYHTYSILWNHHHIVFYVDNIPIRVYKNNEAKGIPYPKMQPMGVYSTLWEADNWATRGGLDKIDWNKAPFNAFYKDFDIEGCQGSNTNNNNCASNPNNWWEGASYQALSAIEARRYRWVRMNHLIYDYCHDKSRFILTPPECLAAI*	333

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aev01g0469	332	PRINTS	Glycosyl hydrolase family 16 signature	124	140	IPR008264	GO:0004553\|GO:0005975
	Aev01g0469	332	PRINTS	Glycosyl hydrolase family 16 signature	162	175	IPR008264	GO:0004553\|GO:0005975
	Aev01g0469	332	PRINTS	Glycosyl hydrolase family 16 signature	180	197	IPR008264	GO:0004553\|GO:0005975
	Aev01g0469	332	PIRSF	EndGlu_transf	36	332	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Aev01g0469	332	Pfam	Glycosyl hydrolases family 16	73	252	IPR000757	GO:0004553\|GO:0005975
	Aev01g0469	332	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED	52	330	IPR044791	GO:0004553
	Aev01g0469	332	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 6-RELATED	52	330	-	-
	Aev01g0469	332	SUPERFAMILY	Concanavalin A-like lectins/glucanases	73	330	IPR013320	-
	Aev01g0469	332	Gene3D	-	60	331	-	-
	Aev01g0469	332	Pfam	Xyloglucan endo-transglycosylase (XET) C-terminus	281	328	IPR010713	GO:0005618\|GO:0006073\|GO:0016762\|GO:0048046
	Aev01g0469	332	CDD	GH16_XET	69	328	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Aev01g0469	332	ProSiteProfiles	Glycosyl hydrolases family 16 (GH16) domain profile.	7	260	IPR000757	GO:0004553\|GO:0005975
	Aev01g0469	332	ProSitePatterns	Glycosyl hydrolases family 16 active sites.	146	156	IPR008263	GO:0004553\|GO:0005975

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aev01g0469	Aev-Chr1	4172297	4174598	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aev01g0469	51	330	Glycoside Hydrolase	AT5G65730	72.695	2.31e-159	445

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aev01g0469	K08235		-	gmx:100791974	508.064

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aev05g0758	05	5313904	5315097	Aev01g0469	01	4172297	4174598	PCT