Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g0418 ATGGCAGTTCAAGCTCAATACCCTTCCAATGTCCTCCTTCTAAACAGAAACGTGCAAGAGGGACATGACTACTCATTACAACCACAACCAGGAGGAGGAGGAGGACTAGTTCTCGATCAACACCACAATCATCCTATCTTATACAATACCGATGGAAGTGCTAATTCGCGCAAGAGAGGAAGAGAAGTCACAGTGACCCAGAACAACAACAACAATAATAACAAGACATCATCAATAATGTTCAACTATGAATCGCAAGCACCACAAGTGATAGAACTCTCTCAGCTCCAAAATCATCATCATCAACAAAACGGTGTCTCCACAGGCCTACGCTTATCCACCTTCTCTGACCAAATACAGAGACCACACCTTCATCAAAATCAAAATCAACAAAATGGGTCTCATCATAACTCTTCTTCATTATTGTCTCAAGGTTTTGCTTCCCAAATCAAACAACAACGGGATGAAATTGACCAATTCCTCCATGCCCAGGGAGAGCAATTGCGGCGGACATTGGCGGAGAAGAGGCAGAGGCATTACCGTGAGCTGCTGAGTGCGGCGGAGGAGGCAGTGGAACGTCGGCTAAGGGAGAAAGAGGCCGAGGTAGAGAAGGCCACTCGCCGGAACGCTGAGTTGGAGGCACGCGCCGCCCAGCTCGCCGCCGAGGTTCAGGTGTGGCAGGCCAAGGCGAGGGCTCAGGAGGCGACGGCCGCGTCACTCCAGGCACAGCTCCAGCAGACCATGATGGCCTCCGCCGGCGCCGCTGGATGCCACGGCGGCGATGACGTTTCGTGCGCCGTGGAGGGCCAGGCGGAGGATGCGGAGTCGGCGTACGTGGACCCTGACAGGGTGGAGGTGATTTCTGTGGCAGCGGTTACGGCGGCGGCGCGTCCGAAATGCAGGGGATGTGGGCGGCGCGTGGCATCGGTGGTGGTGCTGCCGTGTCGGCACTTGTGCATATGCACGGAGTGCGACGCGCATTTCCGCGCGTGTCCCGTTTGCCTCACGCTGAAGAATTCAACCGTTGAGGTCTTTCTCTCTTGA 1044 0.546 MAVQAQYPSNVLLLNRNVQEGHDYSLQPQPGGGGGLVLDQHHNHPILYNTDGSANSRKRGREVTVTQNNNNNNNKTSSIMFNYESQAPQVIELSQLQNHHHQQNGVSTGLRLSTFSDQIQRPHLHQNQNQQNGSHHNSSSLLSQGFASQIKQQRDEIDQFLHAQGEQLRRTLAEKRQRHYRELLSAAEEAVERRLREKEAEVEKATRRNAELEARAAQLAAEVQVWQAKARAQEATAASLQAQLQQTMMASAGAAGCHGGDDVSCAVEGQAEDAESAYVDPDRVEVISVAAVTAAARPKCRGCGRRVASVVVLPCRHLCICTECDAHFRACPVCLTLKNSTVEVFLS* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g0418 347 Coils Coil 181 229 - -
Aev01g0418 347 ProSiteProfiles Zinc finger RING-type profile. 300 334 IPR001841 -
Aev01g0418 347 MobiDBLite consensus disorder prediction 46 77 - -
Aev01g0418 347 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 346 IPR017066 -
Aev01g0418 347 MobiDBLite consensus disorder prediction 125 148 - -
Aev01g0418 347 PIRSF SBP1_RNase_bind 1 347 IPR017066 -
Aev01g0418 347 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 291 347 IPR013083 -
Aev01g0418 347 MobiDBLite consensus disorder prediction 22 77 - -
Aev01g0418 347 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 1 346 - -
Aev01g0418 347 Pfam Zinc finger, C3HC4 type (RING finger) 299 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g0418 Aev-Chr1 3552946 3554293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev01g0418 300 336 Miscellaneous Gene Families AT2G21380 37.838 4.71e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g0418 K19042 - gmx:100788924 330.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev01g0418 01 3552946 3554293 Aev01g0418 01 3552946 3554293 ECH
Aev05g0816 05 5738262 5739321 Aev01g0418 01 3552946 3554293 PCT