Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g1225 ATGGGAGTGACAGCGAAAATTGCTCCTTCGATGCTCTCTTCTGACTTCGCCAATTTGGCTCCTGAGGCTCAGCGCATGCTCGACTTCGGCGCCGATTGGCTCCACATGGACATCATGGTATGGCATTTTGTCCCCAATTTGACTATTGGTGCTCCAGTCATTGAAAGTTTGAGAAAGCACACAAAGGCATATTTGGACTGTCATCTTATGGTTACAAATCCTCTTGATTATGTTGAACCCTTTGCAAAAGCTGGTGCTTCTGGTTTTACATTTCATGTAGAGGCATCAAAAGATAACTGGAAAGAACTTGTCCAAACAATCAAGTCACATGGCATGAGGCCTGGTGTAGCATTAAAGCCTGGGACCCCTATTGAAGACGTTTATCCTCTGGTGGAAGCCGAAAATCCTGTGGAAATGGTTCTTGTGATGACTGTAGAACCTGGATTTGGAGGACAAAAATTTATGCCAGAGATGATGGATAAAGTACGTATACTTAGGAAGAAGTATCCATCACTTGACATAGAGGTTGATGGTGGCTTAGGGCCTTCAACCATAGACGTGGCCGCATCAGCAGGGGCAAATTGCATTGTTGCTGGAAGTTCAGTGTTTGGTGCCACTGAGCCAGCTCAAGTAATATCCTTACTGAGGAATTCTGTTGAGAAAGCCCAGCAAACCTTGATATAG 684 0.4488 MGVTAKIAPSMLSSDFANLAPEAQRMLDFGADWLHMDIMVWHFVPNLTIGAPVIESLRKHTKAYLDCHLMVTNPLDYVEPFAKAGASGFTFHVEASKDNWKELVQTIKSHGMRPGVALKPGTPIEDVYPLVEAENPVEMVLVMTVEPGFGGQKFMPEMMDKVRILRKKYPSLDIEVDGGLGPSTIDVAASAGANCIVAGSSVFGATEPAQVISLLRNSVEKAQQTLI 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g1225 227 PANTHER RIBULOSE-5-PHOSPHATE-3-EPIMERASE 1 225 IPR000056 GO:0005975|GO:0016857
Aed9g1225 227 PIRSF RPE 1 227 IPR026019 GO:0004750|GO:0006098
Aed9g1225 227 Gene3D Aldolase class I 1 226 IPR013785 -
Aed9g1225 227 Pfam Ribulose-phosphate 3 epimerase family 6 203 IPR000056 GO:0005975|GO:0016857
Aed9g1225 227 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 2. 140 162 IPR000056 GO:0005975|GO:0016857
Aed9g1225 227 TIGRFAM rpe: ribulose-phosphate 3-epimerase 6 216 IPR026019 GO:0004750|GO:0006098
Aed9g1225 227 SUPERFAMILY Ribulose-phoshate binding barrel 5 221 IPR011060 -
Aed9g1225 227 CDD RPE 6 216 IPR000056 GO:0005975|GO:0016857
Aed9g1225 227 Hamap Ribulose-phosphate 3-epimerase [rpe]. 4 218 IPR026019 GO:0004750|GO:0006098
Aed9g1225 227 PANTHER RIBULOSE-PHOSPHATE 3-EPIMERASE 1 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g1225 Aed-Chr9 9571695 9576333 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g1225 K01783 - gmx:100500085 421.779