Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g1222 ATGCTTTTGGATTCAAATAAACCAACGCTCCTCATTCCTCATTTTCTCAAACACTCGAACCCTAATTCCCAATTCATTATACATCATACCAGTGTTGTTTGTTTCAAAATTCCTCAAACACACCCTCATGCAATCAATGCAATGCGATTACATCGTGCTATTATTATTGTTGCTGATTCCCGTTGCAATATTTGTTCTGCATCTTCATATTTCTGTTCTTTTCTACAAACTAGACACTTTTCCCATAAGGAACAATGTGAAGAACACCTTACCGGGTATATGAACATTCTCACTGCCAAACTCGGCAAAGCAAGCAGTGAAGAAGAAGAAGAAACCCTTAACACCCTTTTCAATGACCAAGCTTGTGACTCCATACCTCTCTCCCGGGACCTTGTTGGCCGCTTACTCTGGCGATACAAGGACGATTGGAAGTCTGCATTGGCGGTGTTCCGATGGGCCGGTAGGCGGTCGAGCTTTAGACACTCCTCTGAGTCGTATGATATGATGGTGGACATACTGGGCAGGATGAAGGCTATGGAGAAGATGGGTGATTTGCTGGAAGAAATGCGCGAGGGCGGCCTTGTCACTATGAATACCGTGGCCAAGGCAATGAGACGGTTCGTTGGGGCGGGGCGGTGGGTGGATGCCGTGAAGATATTTGATGACTTGCAAGCTCTTGGATTGGAGAAGAACACCGAATCCATGAACTTGTTGCTTGATACCCTGTGTAAGGAGAAGTTTGTGGGGCAGGCTCGCGAAGTTTTCTTGGAGCTGAAGCAACACGTTGCTCCAAATGCTCACACGTTTAACATATTCATTCATGGATGGTGCAAAATCTGCCGCGTGGATGAGGCACATTGGACGGTCCAAGAGATGAAAGGGTATGGTTTTCGTCCGTGTGTTGTGAGTTACTCCACCATCATTCAGTGTTACTGTCAAGAAGGGAATTTCAGCAGGGTGTATGAGCTTCTTGAGGAAATGCACGCTCAGGGGTGCTCTGCAAATGTGATAACTTATACTACTATCATGTGCGCACTGGGAAAGGCTGGAAAGTTTGAGGAAGCTTTGAAAGTGCCCGAGAGAATGAGGTCTTCTGGATGTAGACCGGATACACTTTTCTTCAATTCGTTGATACATACATTGGGTAGAGCAGGTATATTAGATGATGCTGCCTATGTATTCGACGTGGAAATGCCTAAGGCCGGTGTTGCCCCAAATACATCCACTTATAATTCAATGATTTCTATGTTTTGTTATCACGCACAAGAAAAGAGAGCTTTAGAAATACTGGAGGAGATGGAAAATTCAAGCGATTGTAAGCCTGATGCTCAGACTTACCACCCGTTGATCAAGTCTTGCTTCAGAACCGGAAGAATAGATGGTGTGTTGAATGAGATATTAAATGATATGATTAATATACATCATCTCAGTCTTGATCTTTCAACCTATACACTGCTAATTCACGGGCTTTGTAGGGAAGATAGATGCAATTGGGCATTCTCTCTGTTTGAGGAGATGATTGATCAAGATATAATACCAAGATACAGAACTTGTCGTCTGCTATTGGATGAAGTCAAGGAGAAAAATATGTATCAAGCTGCTGAGAAAATTGAGGATCTTATGAAAAAATTGTAA 1635 0.4336 MLLDSNKPTLLIPHFLKHSNPNSQFIIHHTSVVCFKIPQTHPHAINAMRLHRAIIIVADSRCNICSASSYFCSFLQTRHFSHKEQCEEHLTGYMNILTAKLGKASSEEEEETLNTLFNDQACDSIPLSRDLVGRLLWRYKDDWKSALAVFRWAGRRSSFRHSSESYDMMVDILGRMKAMEKMGDLLEEMREGGLVTMNTVAKAMRRFVGAGRWVDAVKIFDDLQALGLEKNTESMNLLLDTLCKEKFVGQAREVFLELKQHVAPNAHTFNIFIHGWCKICRVDEAHWTVQEMKGYGFRPCVVSYSTIIQCYCQEGNFSRVYELLEEMHAQGCSANVITYTTIMCALGKAGKFEEALKVPERMRSSGCRPDTLFFNSLIHTLGRAGILDDAAYVFDVEMPKAGVAPNTSTYNSMISMFCYHAQEKRALEILEEMENSSDCKPDAQTYHPLIKSCFRTGRIDGVLNEILNDMINIHHLSLDLSTYTLLIHGLCREDRCNWAFSLFEEMIDQDIIPRYRTCRLLLDEVKEKNMYQAAEKIEDLMKKL 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g1222 544 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 479 513 IPR002885 -
Aed9g1222 544 PANTHER OS02G0601600 PROTEIN 62 544 - -
Aed9g1222 544 Pfam PPR repeat 165 193 IPR002885 -
Aed9g1222 544 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 406 436 IPR002885 -
Aed9g1222 544 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 265 299 IPR002885 -
Aed9g1222 544 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 300 334 IPR002885 -
Aed9g1222 544 Coils Coil 530 544 - -
Aed9g1222 544 Gene3D Tetratricopeptide repeat domain 423 543 IPR011990 GO:0005515
Aed9g1222 544 Gene3D Tetratricopeptide repeat domain 331 422 IPR011990 GO:0005515
Aed9g1222 544 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 162 196 IPR002885 -
Aed9g1222 544 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 62 544 - -
Aed9g1222 544 Pfam PPR repeat family 230 278 IPR002885 -
Aed9g1222 544 Pfam PPR repeat family 299 347 IPR002885 -
Aed9g1222 544 Pfam PPR repeat family 405 454 IPR002885 -
Aed9g1222 544 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 370 405 IPR002885 -
Aed9g1222 544 TIGRFAM PPR: pentatricopeptide repeat domain 374 407 IPR002885 -
Aed9g1222 544 TIGRFAM PPR: pentatricopeptide repeat domain 409 443 IPR002885 -
Aed9g1222 544 TIGRFAM PPR: pentatricopeptide repeat domain 302 335 IPR002885 -
Aed9g1222 544 TIGRFAM PPR: pentatricopeptide repeat domain 337 371 IPR002885 -
Aed9g1222 544 TIGRFAM PPR: pentatricopeptide repeat domain 482 513 IPR002885 -
Aed9g1222 544 TIGRFAM PPR: pentatricopeptide repeat domain 267 299 IPR002885 -
Aed9g1222 544 Gene3D Tetratricopeptide repeat domain 260 330 IPR011990 GO:0005515
Aed9g1222 544 Gene3D Tetratricopeptide repeat domain 98 259 IPR011990 GO:0005515
Aed9g1222 544 Pfam PPR repeat 476 506 IPR002885 -
Aed9g1222 544 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 335 369 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g1222 Aed-Chr9 9531018 9532652 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g1222 211 541 Miscellaneous Gene Families AT4G11690 26.765 7.69e-30 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g1222 - - gmx:100819027 865.914