Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g1207 ATGTCTATGAACAACAACAACAACCCCTCTTCCTCCGGCTACCCACAACATTCCCAAATTGCCCCTGGCCAGTACCCCATTTCCCAGGCCCACGCCATCGTCCAAGCCCAGTTCCAGGCCCAGCTCCAAGCCCACGGGCTCTCCCTCAACCCCAATCCCAACGCCAAACGTTTCCCTCCCAAACCCCCAATTCACACCGCTGTCGCCACGCCGTTCAAACAAACGGAACTCGCTCGAAGGAAGAAGCATAGACCAAACGAGAAACAGCTTCCGGAGAAAGCCTCCGCAATTCTTCCGGAATCTGCACTCTACACGGAGCTTCTCGACGTGGAGGCGCGCGTGGACGCCGCACTCGTGCGAAAGAAGATTGACATACATGAAGCGCTGAAAAACCCACCTTGCGTTCAGAAAACCCTAAGGATCTTCGTGTTCAACACGTTCGCGGATTCGAATCCTTCCACTTGGACTCTCAAGATAGTTGGAAGGATTTTGGAAGATGGCGAAGATCCTGAACAGGCTGGACTTGCTGCTGCTTCTGCTCAGAGGATGATGCCCCAATTGTATCCAAAATTCTCCGCTTTTTTCAAGCGAGTAACGATTAACCTCGACAAGCGGCTGTATCCGGAGAACAATGTGATCGCGTGGGAGAATTTGCGGTCCGCGGCGTCTCACGAGGGTTTCGAGGTGAAGAGGAAGGGGGACACGGAGTTCCCGGCGCAGATTCGGCTGGAGATGAATTACGTGCCGGAGAAGTTTATGCTGTCGCCCGCGCTGCGCGAGGTGCTTGGCATTCAGGTTGACACGCGGGCGAGGATTGTTTCGGCCATCTGGCATTATGTGAAGGCGAGGAAACTGCAGTACCAGAGCGACCCCTCGTTCTTCCGCTGTGATCAGGCTCTGCATAGGGTGTTCGGGGAGGATAGGGTGAGGTTCACAATGGTCTCGCAGAAGATCTCGCAGCATTTGTTCCCTCCTCAGGTTATACTTTTGGAGCATATGATCAAGCTATCAGGGAATAGTCCGGTCGGGTCTGCTTGTTATGATGTGATGGTGGATGTCCCTTTTCCCATTCTGAGGGAATTGAATACCTTGGCGGCCAATGTGGAGAGGAGCAAAGAGATCGAGGCCTGCGATGAGTCCATATGCGGAATCATTCGGAAAATACACGAACACCGCAGGAGGCGGGCGTTCTTTGTTGGTTTTAGTCAATCTCCCCTGGAATTTGTCAAGGCCTTGGTTGAATCTCAAAACAAGGATCTGAAAGTTTTACTTGGAGAATCTGGTCACAATGCTGAAAAGGACCGCAAATCGGATTTCTTCAAGCAACCATGGGTTGAGGATGCTATTGTTCGCTATTTGAATCGCAAACCAGCTGCAGGAAGCAATGTGCCAGGGAGCACATGA 1404 0.5235 MSMNNNNNPSSSGYPQHSQIAPGQYPISQAHAIVQAQFQAQLQAHGLSLNPNPNAKRFPPKPPIHTAVATPFKQTELARRKKHRPNEKQLPEKASAILPESALYTELLDVEARVDAALVRKKIDIHEALKNPPCVQKTLRIFVFNTFADSNPSTWTLKIVGRILEDGEDPEQAGLAAASAQRMMPQLYPKFSAFFKRVTINLDKRLYPENNVIAWENLRSAASHEGFEVKRKGDTEFPAQIRLEMNYVPEKFMLSPALREVLGIQVDTRARIVSAIWHYVKARKLQYQSDPSFFRCDQALHRVFGEDRVRFTMVSQKISQHLFPPQVILLEHMIKLSGNSPVGSACYDVMVDVPFPILRELNTLAANVERSKEIEACDESICGIIRKIHEHRRRRAFFVGFSQSPLEFVKALVESQNKDLKVLLGESGHNAEKDRKSDFFKQPWVEDAIVRYLNRKPAAGSNVPGST 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g1207 467 ProSiteProfiles SWIB/MDM2 domain profile. 247 324 IPR003121 -
Aed9g1207 467 CDD SWIB_like 254 322 - -
Aed9g1207 467 Gene3D SWIB/MDM2 domain 244 327 IPR036885 -
Aed9g1207 467 SMART swib_2 248 327 IPR019835 -
Aed9g1207 467 MobiDBLite consensus disorder prediction 1 22 - -
Aed9g1207 467 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 48 464 - -
Aed9g1207 467 SUPERFAMILY SWIB/MDM2 domain 242 332 IPR036885 -
Aed9g1207 467 Pfam SWIB/MDM2 domain 251 322 IPR003121 -
Aed9g1207 467 PANTHER SWI/SNF COMPLEX COMPONENT SNF12 HOMOLOG ISOFORM X1 48 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g1207 Aed-Chr9 9353422 9355961 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Aed9g1207 SWIB 2.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g1207 K11650 - gmx:100785069 779.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g1207 9 9353422 9355961 Aed9g1207 9 9353422 9355961 ECH
Aed9g1207 9 9353422 9355961 Aed3g1248 3 11206231 11206631 PCT