Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g1202 ATGTTGGCGCCAAAATTGCAACCCTTTACGCCGCCATCACCACTGCAGCAGAGAACCCTCGCCACTCTAGCACTCATCGCCGACAAATGCACGACTCTGGAGCAACTAAAGCAAGTCCACGCGAAGATGATCGTCTCCTCCGTCGCCGCCACCGACCCCTTCGCCGTGAGCCGCCTGTTCTTCTCGTGCGCCCTCTCCCCCTTCGGCGACCTCTCCCACGCTTCCAGAATCTTCCACTCCACTCCCCACCCCAACTCCTTCATGTGGAACACCCTCATACGCGCCCATCCCCACGCGCTCTCAATCTACGTAGCCATGCGCCGAAGCCACGTCATCCCCGGGAAACACACCTTCCCCTTCCTCCTCAAGGCGTGTTGCTCCTCGTTAACAGCCTCCAGACAGGTCCACGTCCACGTCATCAAGTTCGGGTTGGACTCCGTTTCCCACGTGTCTAAATCCTTGATTAGAAATTACTCTGTTTCGGGAAACTGCGTCGATGCCCGTCTTGTGTTTGACGAAATGCCGGACAAAAGTTCGAGTCTTTGGACCACTATGATTTGTGGGTACGCGCAGAATTTCTGCTCCAACGAGGCTTTGAGGCTTTTCGAGGACATGGTCGGGGAGGGGTTCGAGCCCGGTGGCGCCACCTTGGCTTCGGTGTTGTCCGCGTGTGCCCGGTCGGGATGTCTTGAGCTCGGGGAAAGGATTCATGGCTTAATGAAGGCAAGAGGGGTGGCTGGATTGGGAGATGGGGTAATTCTTGGGACCGCATTGGTTTACATGTACGCAAAGAACGGGGTGATTGCGGTGGCGCGGAGGCTGTTTGATGAAATGCCAGAGAGGAATATTGTTACTTGGAATGCTATGATCTGTGGATTGGGTGCTTATGGACATGTGGATGATGCTCTTGGTTTGTTTGAGAAGATGAAGAGGGAGCGGGTTGTTGTTCCTAACGATGTCACCTTTGTTGGTGTTTTATCGGCTTGTTGTCATGCTGGGTTGATTGATATTGGTCGTGAGATTTTCCGGTCGATGAAGTTGGTGTATGGAATTGAGCCAAAGATTGAGCATTATGGGTGCTTGATCGATCTTCTTGGGCGAGGGGGTAGGCTACTAGAGGCGGAGGAGCTGGTGAAAGGAATGCCGTGGAAGGCTGATGTGGTTATTTGGGGAGCTTTGTTGGCAGCTAGCAGGAATAGTGGGAACACTGAGGTTGCTGAAAGAGTGGTGAAGGAAATTCTTGCTCTGGAGCCTCGGAATCACGGTGTTCATGTTGCTTTGTCTAATATGTATGCAGAGGCTGGACAGTGGCAGGAAGTTTTGAGATTGAGGAAGACGATGAAAGAAGAGCAACTCAAGAAAGCACCGGGGTGGAGCCTTGTCACTACTTAG 1392 0.5295 MLAPKLQPFTPPSPLQQRTLATLALIADKCTTLEQLKQVHAKMIVSSVAATDPFAVSRLFFSCALSPFGDLSHASRIFHSTPHPNSFMWNTLIRAHPHALSIYVAMRRSHVIPGKHTFPFLLKACCSSLTASRQVHVHVIKFGLDSVSHVSKSLIRNYSVSGNCVDARLVFDEMPDKSSSLWTTMICGYAQNFCSNEALRLFEDMVGEGFEPGGATLASVLSACARSGCLELGERIHGLMKARGVAGLGDGVILGTALVYMYAKNGVIAVARRLFDEMPERNIVTWNAMICGLGAYGHVDDALGLFEKMKRERVVVPNDVTFVGVLSACCHAGLIDIGREIFRSMKLVYGIEPKIEHYGCLIDLLGRGGRLLEAEELVKGMPWKADVVIWGALLAASRNSGNTEVAERVVKEILALEPRNHGVHVALSNMYAEAGQWQEVLRLRKTMKEEQLKKAPGWSLVTT 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g1202 463 PANTHER OS11G0483950 PROTEIN 17 462 - -
Aed9g1202 463 Pfam PPR repeat family 281 331 IPR002885 -
Aed9g1202 463 Gene3D Tetratricopeptide repeat domain 249 338 IPR011990 GO:0005515
Aed9g1202 463 Pfam PPR repeat 357 382 IPR002885 -
Aed9g1202 463 Pfam PPR repeat 219 245 IPR002885 -
Aed9g1202 463 Pfam PPR repeat 153 177 IPR002885 -
Aed9g1202 463 Pfam PPR repeat 181 210 IPR002885 -
Aed9g1202 463 Pfam E motif 402 461 IPR046848 -
Aed9g1202 463 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 17 462 - -
Aed9g1202 463 Gene3D Tetratricopeptide repeat domain 339 460 IPR011990 GO:0005515
Aed9g1202 463 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 178 212 IPR002885 -
Aed9g1202 463 Gene3D Tetratricopeptide repeat domain 96 248 IPR011990 GO:0005515
Aed9g1202 463 TIGRFAM PPR: pentatricopeptide repeat domain 256 284 IPR002885 -
Aed9g1202 463 TIGRFAM PPR: pentatricopeptide repeat domain 284 318 IPR002885 -
Aed9g1202 463 TIGRFAM PPR: pentatricopeptide repeat domain 320 353 IPR002885 -
Aed9g1202 463 TIGRFAM PPR: pentatricopeptide repeat domain 181 212 IPR002885 -
Aed9g1202 463 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 282 316 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g1202 Aed-Chr9 9284078 9285469 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g1202 22 461 Glycoside Hydrolase AT3G49170 32.892 3.55e-70 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g1202 - - gmx:113000421 783.482