Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g1075 AGAATAAAGATCATTAGAAATCAATATTCGTATTCGCGAAGAACAAAGAAGAAGCATAAGGCTCTTATCCGTGATGACGACGACGTGCGTATCGGGCATCATCGCCGGCGATCCCCCTCATCGGCGGCGGTAAAAAAAAGTCTCTTCCCGTCGTTCACGTCCTCCCACGGTCGTTTCCGCGTTCCGTTGAATTCAAGCAACAATTGGGAAAGCGTGTTTCATTCCGTTCCAATGGGGAAAGGTGGTGCTGTGGTGACGATGGATCACGTGCTGCTGGCGTCGCAGGAGACGAAGGAGGCACGTGAGGTGCGGATTCGGGGCCTCTTCGATTTCTTCGACAGAGAGAATGTGGGGTTCTTGGACTACACTCACATCGAAGCGGGTCTCTCGGCGCTTCTGATTCCATCGGAGTACAAGTACGCAAAGGATTTGCTCAACGCCTGCGACGCCAACAAGGACGGAAGAGTGGATTTCCAAGAGTTCAGCAAGTACATGGACGACAAAGAATTGGAGCTTTATCGCATTTTTCAGGCCATCGACGTCGCGCACAACGGTTGCATTTTGCCGGAGGAGCTCTGGGAGGCACTTATTGATGATGATGAACTCGGCCGTTTTGTTGAGCATGTTGATAAGGATAATAATGGTGTAATAACATTTGAAGAATGGAGGGATTTTCTGCTGCTTTACCCTCACGAGGCAACCATTGAGAACATTTACCATTATTTGGAGCGGATATGTATGGTTGATATTGGGGAACAGACTGTTATTCCAGCAGGCATTGGTAAGCACATTCATGCAAGCAGGTATCTGATTGCAGGAGGAGTAGCAGGTGTAGCGTCACGCACAGCAACTGCACCCCTTGATCGTCTAAAGGTTGTATTGCAAGTCCAAACAACACGAGCTCAAATAATGCCTGCAATAAAAGATATATGGAAAGAGGGTGGTTTGTTAGGATTTTTTCGAGGAAATGGCTTAAATGTTCTTAAGGTGGCCCCTGAGAGTGCCATTAGATTTTATTGCTATGAGATGATGAAGAGCTTCATTGTGAGAGCCAAAGGGGAAGAGGCAAAGGCTTCTGATATTGGAGCTATGGGGCGGCTGCTAGCGGGTGGTATTGCTGGTGCTGTAGCTCAAACTGCAATATATCCCATGGATCTTGTTAAAACAAAACTACAAACCTATGCTTGTAAAAGTGGAAGAGTTCCAAGTCTTGTAACCCTTTCAAAAGATATATGGGTTCGGGAAGGACCCCGCGCATTTTATAGGGGATTGATTCCTTCTCTTCTTGGGATCATCCCTTATGCTGGCATTGATCTTGCTGCCTATGAAACCTTGAAGGATGTGTCCAAGCAGTATATTCCTCATGACACAGAACCTGGCCCACTAGTACAATTAGGATGTGGAACTGTATCTGGAACTCTTGGAGCATCATGTGTTTACCCATTGCAGGTTGTTAGGACAAGAATGCAGGCTCAAAGCTCTTATAAGGGAATGGCTGATGTATTCAGGAAAACCCTGAAACATGAAGGCTTAAGGGGATTCTACAAAGGAATATTTCCTAACTTGCTCAAAATTGTGCCATCAGCAAGCATCACCTACATGGTTTATGAGAGAATGAAAAAAGGTTTGGATTTAGAGTGA 1641 0.4595 RIKIIRNQYSYSRRTKKKHKALIRDDDDVRIGHHRRRSPSSAAVKKSLFPSFTSSHGRFRVPLNSSNNWESVFHSVPMGKGGAVVTMDHVLLASQETKEAREVRIRGLFDFFDRENVGFLDYTHIEAGLSALLIPSEYKYAKDLLNACDANKDGRVDFQEFSKYMDDKELELYRIFQAIDVAHNGCILPEELWEALIDDDELGRFVEHVDKDNNGVITFEEWRDFLLLYPHEATIENIYHYLERICMVDIGEQTVIPAGIGKHIHASRYLIAGGVAGVASRTATAPLDRLKVVLQVQTTRAQIMPAIKDIWKEGGLLGFFRGNGLNVLKVAPESAIRFYCYEMMKSFIVRAKGEEAKASDIGAMGRLLAGGIAGAVAQTAIYPMDLVKTKLQTYACKSGRVPSLVTLSKDIWVREGPRAFYRGLIPSLLGIIPYAGIDLAAYETLKDVSKQYIPHDTEPGPLVQLGCGTVSGTLGASCVYPLQVVRTRMQAQSSYKGMADVFRKTLKHEGLRGFYKGIFPNLLKIVPSASITYMVYERMKKGLDLE 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g1075 546 ProSiteProfiles EF-hand calcium-binding domain profile. 136 171 IPR002048 GO:0005509
Aed9g1075 546 ProSitePatterns EF-hand calcium-binding domain. 149 161 IPR018247 -
Aed9g1075 546 ProSiteProfiles Solute carrier (Solcar) repeat profile. 459 542 IPR018108 -
Aed9g1075 546 ProSitePatterns EF-hand calcium-binding domain. 210 222 IPR018247 -
Aed9g1075 546 Gene3D - 87 242 - -
Aed9g1075 546 ProSiteProfiles Solute carrier (Solcar) repeat profile. 264 347 IPR018108 -
Aed9g1075 546 Pfam Mitochondrial carrier protein 360 449 IPR018108 -
Aed9g1075 546 Pfam Mitochondrial carrier protein 263 350 IPR018108 -
Aed9g1075 546 Pfam Mitochondrial carrier protein 460 543 IPR018108 -
Aed9g1075 546 Pfam EF hand 209 225 IPR002048 GO:0005509
Aed9g1075 546 Pfam EF hand 142 163 IPR002048 GO:0005509
Aed9g1075 546 ProSiteProfiles EF-hand calcium-binding domain profile. 197 232 IPR002048 GO:0005509
Aed9g1075 546 SUPERFAMILY Mitochondrial carrier 262 538 IPR023395 -
Aed9g1075 546 SMART efh_1 171 199 IPR002048 GO:0005509
Aed9g1075 546 SMART efh_1 201 229 IPR002048 GO:0005509
Aed9g1075 546 SMART efh_1 104 132 IPR002048 GO:0005509
Aed9g1075 546 SMART efh_1 140 168 IPR002048 GO:0005509
Aed9g1075 546 Gene3D Mitochondrial carrier domain 260 543 IPR023395 -
Aed9g1075 546 PRINTS Mitochondrial carrier protein signature 376 394 IPR002067 GO:0055085
Aed9g1075 546 PRINTS Mitochondrial carrier protein signature 269 282 IPR002067 GO:0055085
Aed9g1075 546 PRINTS Mitochondrial carrier protein signature 282 296 IPR002067 GO:0055085
Aed9g1075 546 PRINTS Mitochondrial carrier protein signature 468 490 IPR002067 GO:0055085
Aed9g1075 546 PRINTS Mitochondrial carrier protein signature 322 342 IPR002067 GO:0055085
Aed9g1075 546 PRINTS Mitochondrial carrier protein signature 421 439 IPR002067 GO:0055085
Aed9g1075 546 SUPERFAMILY EF-hand 100 260 IPR011992 -
Aed9g1075 546 ProSiteProfiles Solute carrier (Solcar) repeat profile. 361 448 IPR018108 -
Aed9g1075 546 PANTHER SOLUTE CARRIER FAMILY 25 113 543 - -
Aed9g1075 546 PANTHER CALCIUM-BINDING MITOCHONDRIAL CARRIER PROTEIN SCAMC-1-B-LIKE 113 543 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g1075 Aed-Chr9 7921054 7924966 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g1075 77 546 EF-hand Containing Proteins AT5G51050 69.602 0.0 684
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g1075 K14684 - gmx:100775805 856.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g1075 9 7921054 7924966 Aed9g1075 9 7921054 7924966 ECH